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Corrected and Republished from: “Isolation and Characterization of the First Freshwater Cyanophage Infecting Pseudanabaena”

Cyanobacteria are the major primary producers in both freshwater and marine environments. However, the majority of freshwater cyanophages remain unknown due to the limited number of cyanophage isolates. In this study, we present a novel lytic freshwater cyanophage, PA-SR01, which was isolated from t...

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Autores principales: Zhang, Dong, You, Fang, He, Yiliang, Te, Shu Harn, Gin, Karina Yew-Hoong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10286775/
https://www.ncbi.nlm.nih.gov/pubmed/37074059
http://dx.doi.org/10.1128/jvi.00405-23
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author Zhang, Dong
You, Fang
He, Yiliang
Te, Shu Harn
Gin, Karina Yew-Hoong
author_facet Zhang, Dong
You, Fang
He, Yiliang
Te, Shu Harn
Gin, Karina Yew-Hoong
author_sort Zhang, Dong
collection PubMed
description Cyanobacteria are the major primary producers in both freshwater and marine environments. However, the majority of freshwater cyanophages remain unknown due to the limited number of cyanophage isolates. In this study, we present a novel lytic freshwater cyanophage, PA-SR01, which was isolated from the Singapore Serangoon Reservoir. To our knowledge, this is the first isolate of a cyanophage that has been found to infect the cyanobacterium Pseudanabaena. PA-SR01 has a narrow host range, a short latent period, and is chloroform sensitive. PA-SR01 is a member of Siphoviridae with a long noncontractile tail. It is a double-stranded DNA virus with a 137,012-bp genome. Functional annotation for the predicted open reading frames (ORFs) of the PA-SR01 genome identified genes with putative functions related to DNA metabolism, structural proteins, lysis, host-derived metabolic genes, and DNA packaging. Out of 166 predicted ORFs, only 17 ORFs have homology with genes with known function. Phylogenetic analysis of the major capsid protein and terminase large subunit further suggests that phage PA-SR01 is evolutionary distinct from known cyanophages. Metagenomics sequence recruitment onto the PA-SR01 genome indicates that PA-SR01 represents a new evolutionary lineage of phage which shares considerable genetic similarities with phage sequences in aquatic environments and could play key ecological roles. IMPORTANCE This study presents the isolation of the very first freshwater cyanophage, PA-SR01, that infects Pseudanabaena, and fills an important knowledge gap on freshwater cyanophages as well as cyanophages infecting Pseudanabaena.
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spelling pubmed-102867752023-06-23 Corrected and Republished from: “Isolation and Characterization of the First Freshwater Cyanophage Infecting Pseudanabaena” Zhang, Dong You, Fang He, Yiliang Te, Shu Harn Gin, Karina Yew-Hoong J Virol Genetic Diversity and Evolution Cyanobacteria are the major primary producers in both freshwater and marine environments. However, the majority of freshwater cyanophages remain unknown due to the limited number of cyanophage isolates. In this study, we present a novel lytic freshwater cyanophage, PA-SR01, which was isolated from the Singapore Serangoon Reservoir. To our knowledge, this is the first isolate of a cyanophage that has been found to infect the cyanobacterium Pseudanabaena. PA-SR01 has a narrow host range, a short latent period, and is chloroform sensitive. PA-SR01 is a member of Siphoviridae with a long noncontractile tail. It is a double-stranded DNA virus with a 137,012-bp genome. Functional annotation for the predicted open reading frames (ORFs) of the PA-SR01 genome identified genes with putative functions related to DNA metabolism, structural proteins, lysis, host-derived metabolic genes, and DNA packaging. Out of 166 predicted ORFs, only 17 ORFs have homology with genes with known function. Phylogenetic analysis of the major capsid protein and terminase large subunit further suggests that phage PA-SR01 is evolutionary distinct from known cyanophages. Metagenomics sequence recruitment onto the PA-SR01 genome indicates that PA-SR01 represents a new evolutionary lineage of phage which shares considerable genetic similarities with phage sequences in aquatic environments and could play key ecological roles. IMPORTANCE This study presents the isolation of the very first freshwater cyanophage, PA-SR01, that infects Pseudanabaena, and fills an important knowledge gap on freshwater cyanophages as well as cyanophages infecting Pseudanabaena. American Society for Microbiology 2023-04-19 /pmc/articles/PMC10286775/ /pubmed/37074059 http://dx.doi.org/10.1128/jvi.00405-23 Text en Copyright © 2023 Zhang et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genetic Diversity and Evolution
Zhang, Dong
You, Fang
He, Yiliang
Te, Shu Harn
Gin, Karina Yew-Hoong
Corrected and Republished from: “Isolation and Characterization of the First Freshwater Cyanophage Infecting Pseudanabaena”
title Corrected and Republished from: “Isolation and Characterization of the First Freshwater Cyanophage Infecting Pseudanabaena”
title_full Corrected and Republished from: “Isolation and Characterization of the First Freshwater Cyanophage Infecting Pseudanabaena”
title_fullStr Corrected and Republished from: “Isolation and Characterization of the First Freshwater Cyanophage Infecting Pseudanabaena”
title_full_unstemmed Corrected and Republished from: “Isolation and Characterization of the First Freshwater Cyanophage Infecting Pseudanabaena”
title_short Corrected and Republished from: “Isolation and Characterization of the First Freshwater Cyanophage Infecting Pseudanabaena”
title_sort corrected and republished from: “isolation and characterization of the first freshwater cyanophage infecting pseudanabaena”
topic Genetic Diversity and Evolution
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10286775/
https://www.ncbi.nlm.nih.gov/pubmed/37074059
http://dx.doi.org/10.1128/jvi.00405-23
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