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Reference genome for the American rubyspot damselfly, Hetaerina americana
Damselflies and dragonflies (Order: Odonata) play important roles in both aquatic and terrestrial food webs and can serve as sentinels of ecosystem health and predictors of population trends in other taxa. The habitat requirements and limited dispersal of lotic damselflies make them especially sensi...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10287145/ https://www.ncbi.nlm.nih.gov/pubmed/37195415 http://dx.doi.org/10.1093/jhered/esad031 |
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author | Grether, Gregory F Beninde, Joscha Beraut, Eric Chumchim, Noravit Escalona, Merly MacDonald, Zachary G Miller, Courtney Sahasrabudhe, Ruta Shedlock, Andrew M Toffelmier, Erin Shaffer, H Bradley |
author_facet | Grether, Gregory F Beninde, Joscha Beraut, Eric Chumchim, Noravit Escalona, Merly MacDonald, Zachary G Miller, Courtney Sahasrabudhe, Ruta Shedlock, Andrew M Toffelmier, Erin Shaffer, H Bradley |
author_sort | Grether, Gregory F |
collection | PubMed |
description | Damselflies and dragonflies (Order: Odonata) play important roles in both aquatic and terrestrial food webs and can serve as sentinels of ecosystem health and predictors of population trends in other taxa. The habitat requirements and limited dispersal of lotic damselflies make them especially sensitive to habitat loss and fragmentation. As such, landscape genomic studies of these taxa can help focus conservation efforts on watersheds with high levels of genetic diversity, local adaptation, and even cryptic endemism. Here, as part of the California Conservation Genomics Project (CCGP), we report the first reference genome for the American rubyspot damselfly, Hetaerina americana, a species associated with springs, streams and rivers throughout California. Following the CCGP assembly pipeline, we produced two de novo genome assemblies. The primary assembly includes 1,630,044,487 base pairs, with a contig N50 of 5.4 Mb, a scaffold N50 of 86.2 Mb, and a BUSCO completeness score of 97.6%. This is the seventh Odonata genome to be made publicly available and the first for the subfamily Hetaerininae. This reference genome fills an important phylogenetic gap in our understanding of Odonata genome evolution, and provides a genomic resource for a host of interesting ecological, evolutionary, and conservation questions for which the rubyspot damselfly genus Hetaerina is an important model system. |
format | Online Article Text |
id | pubmed-10287145 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102871452023-06-23 Reference genome for the American rubyspot damselfly, Hetaerina americana Grether, Gregory F Beninde, Joscha Beraut, Eric Chumchim, Noravit Escalona, Merly MacDonald, Zachary G Miller, Courtney Sahasrabudhe, Ruta Shedlock, Andrew M Toffelmier, Erin Shaffer, H Bradley J Hered Genome Resources Damselflies and dragonflies (Order: Odonata) play important roles in both aquatic and terrestrial food webs and can serve as sentinels of ecosystem health and predictors of population trends in other taxa. The habitat requirements and limited dispersal of lotic damselflies make them especially sensitive to habitat loss and fragmentation. As such, landscape genomic studies of these taxa can help focus conservation efforts on watersheds with high levels of genetic diversity, local adaptation, and even cryptic endemism. Here, as part of the California Conservation Genomics Project (CCGP), we report the first reference genome for the American rubyspot damselfly, Hetaerina americana, a species associated with springs, streams and rivers throughout California. Following the CCGP assembly pipeline, we produced two de novo genome assemblies. The primary assembly includes 1,630,044,487 base pairs, with a contig N50 of 5.4 Mb, a scaffold N50 of 86.2 Mb, and a BUSCO completeness score of 97.6%. This is the seventh Odonata genome to be made publicly available and the first for the subfamily Hetaerininae. This reference genome fills an important phylogenetic gap in our understanding of Odonata genome evolution, and provides a genomic resource for a host of interesting ecological, evolutionary, and conservation questions for which the rubyspot damselfly genus Hetaerina is an important model system. Oxford University Press 2023-05-17 /pmc/articles/PMC10287145/ /pubmed/37195415 http://dx.doi.org/10.1093/jhered/esad031 Text en © The American Genetic Association. 2023. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Genome Resources Grether, Gregory F Beninde, Joscha Beraut, Eric Chumchim, Noravit Escalona, Merly MacDonald, Zachary G Miller, Courtney Sahasrabudhe, Ruta Shedlock, Andrew M Toffelmier, Erin Shaffer, H Bradley Reference genome for the American rubyspot damselfly, Hetaerina americana |
title | Reference genome for the American rubyspot damselfly, Hetaerina americana |
title_full | Reference genome for the American rubyspot damselfly, Hetaerina americana |
title_fullStr | Reference genome for the American rubyspot damselfly, Hetaerina americana |
title_full_unstemmed | Reference genome for the American rubyspot damselfly, Hetaerina americana |
title_short | Reference genome for the American rubyspot damselfly, Hetaerina americana |
title_sort | reference genome for the american rubyspot damselfly, hetaerina americana |
topic | Genome Resources |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10287145/ https://www.ncbi.nlm.nih.gov/pubmed/37195415 http://dx.doi.org/10.1093/jhered/esad031 |
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