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Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae)
Climate-driven changes in hydrological regimes are of global importance and are particularly significant in riparian ecosystems. Riparian ecosystems in California provide refuge to many native and vulnerable species within a xeric landscape. California Tetragnatha spiders play a key role in riparian...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10287146/ https://www.ncbi.nlm.nih.gov/pubmed/37042574 http://dx.doi.org/10.1093/jhered/esad013 |
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author | Adams, Seira A Graham, Natalie R Holmquist, Anna J Sheffer, Monica M Steigerwald, Emma C Sahasrabudhe, Ruta Nguyen, Oanh Beraut, Eric Fairbairn, Colin Sacco, Samuel Seligmann, William Escalona, Merly Shaffer, H Bradley Toffelmier, Erin Gillespie, Rosemary G |
author_facet | Adams, Seira A Graham, Natalie R Holmquist, Anna J Sheffer, Monica M Steigerwald, Emma C Sahasrabudhe, Ruta Nguyen, Oanh Beraut, Eric Fairbairn, Colin Sacco, Samuel Seligmann, William Escalona, Merly Shaffer, H Bradley Toffelmier, Erin Gillespie, Rosemary G |
author_sort | Adams, Seira A |
collection | PubMed |
description | Climate-driven changes in hydrological regimes are of global importance and are particularly significant in riparian ecosystems. Riparian ecosystems in California provide refuge to many native and vulnerable species within a xeric landscape. California Tetragnatha spiders play a key role in riparian ecosystems, serving as a link between terrestrial and aquatic elements. Their tight reliance on water paired with the widespread distributions of many species make them ideal candidates to better understand the relative role of waterways versus geographic distance in shaping the population structure of riparian species. To assist in better understanding population structure, we constructed a reference genome assembly for Tetragnatha versicolor using long-read sequencing, scaffolded with proximity ligation Omni-C data. The near-chromosome-level assembly is comprised of 174 scaffolds spanning 1.06 Gb pairs, with a scaffold N50 of 64.1 Mb pairs and BUSCO completeness of 97.6%. This reference genome will facilitate future study of T. versicolor population structure associated with the rapidly changing environment of California. |
format | Online Article Text |
id | pubmed-10287146 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102871462023-06-23 Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae) Adams, Seira A Graham, Natalie R Holmquist, Anna J Sheffer, Monica M Steigerwald, Emma C Sahasrabudhe, Ruta Nguyen, Oanh Beraut, Eric Fairbairn, Colin Sacco, Samuel Seligmann, William Escalona, Merly Shaffer, H Bradley Toffelmier, Erin Gillespie, Rosemary G J Hered Genome Resources Climate-driven changes in hydrological regimes are of global importance and are particularly significant in riparian ecosystems. Riparian ecosystems in California provide refuge to many native and vulnerable species within a xeric landscape. California Tetragnatha spiders play a key role in riparian ecosystems, serving as a link between terrestrial and aquatic elements. Their tight reliance on water paired with the widespread distributions of many species make them ideal candidates to better understand the relative role of waterways versus geographic distance in shaping the population structure of riparian species. To assist in better understanding population structure, we constructed a reference genome assembly for Tetragnatha versicolor using long-read sequencing, scaffolded with proximity ligation Omni-C data. The near-chromosome-level assembly is comprised of 174 scaffolds spanning 1.06 Gb pairs, with a scaffold N50 of 64.1 Mb pairs and BUSCO completeness of 97.6%. This reference genome will facilitate future study of T. versicolor population structure associated with the rapidly changing environment of California. Oxford University Press 2023-04-12 /pmc/articles/PMC10287146/ /pubmed/37042574 http://dx.doi.org/10.1093/jhered/esad013 Text en © The American Genetic Association. 2023. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Resources Adams, Seira A Graham, Natalie R Holmquist, Anna J Sheffer, Monica M Steigerwald, Emma C Sahasrabudhe, Ruta Nguyen, Oanh Beraut, Eric Fairbairn, Colin Sacco, Samuel Seligmann, William Escalona, Merly Shaffer, H Bradley Toffelmier, Erin Gillespie, Rosemary G Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae) |
title | Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae) |
title_full | Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae) |
title_fullStr | Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae) |
title_full_unstemmed | Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae) |
title_short | Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae) |
title_sort | reference genome of the long-jawed orb-weaver, tetragnatha versicolor (araneae: tetragnathidae) |
topic | Genome Resources |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10287146/ https://www.ncbi.nlm.nih.gov/pubmed/37042574 http://dx.doi.org/10.1093/jhered/esad013 |
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