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Kinetic principles of ParA2-ATP cycling guide dynamic subcellular localizations in Vibrio cholerae

Dynamic protein gradients are exploited for the spatial organization and segregation of replicated chromosomes. However, mechanisms of protein gradient formation and how that spatially organizes chromosomes remain poorly understood. Here, we have determined the kinetic principles of subcellular loca...

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Autores principales: Chodha, Satpal S, Brooks, Adam C, Davis, Peter J, Ramachandran, Revathy, Chattoraj, Dhruba K, Hwang, Ling Chin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10287910/
https://www.ncbi.nlm.nih.gov/pubmed/37140034
http://dx.doi.org/10.1093/nar/gkad321
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author Chodha, Satpal S
Brooks, Adam C
Davis, Peter J
Ramachandran, Revathy
Chattoraj, Dhruba K
Hwang, Ling Chin
author_facet Chodha, Satpal S
Brooks, Adam C
Davis, Peter J
Ramachandran, Revathy
Chattoraj, Dhruba K
Hwang, Ling Chin
author_sort Chodha, Satpal S
collection PubMed
description Dynamic protein gradients are exploited for the spatial organization and segregation of replicated chromosomes. However, mechanisms of protein gradient formation and how that spatially organizes chromosomes remain poorly understood. Here, we have determined the kinetic principles of subcellular localizations of ParA2 ATPase, an essential spatial regulator of chromosome 2 segregation in the multichromosome bacterium, Vibrio cholerae. We found that ParA2 gradients self-organize in V. cholerae cells into dynamic pole-to-pole oscillations. We examined the ParA2 ATPase cycle and ParA2 interactions with ParB2 and DNA. In vitro, ParA2-ATP dimers undergo a rate-limiting conformational switch, catalysed by DNA to achieve DNA-binding competence. This active ParA2 state loads onto DNA cooperatively as higher order oligomers. Our results indicate that the midcell localization of ParB2-parS2 complexes stimulate ATP hydrolysis and ParA2 release from the nucleoid, generating an asymmetric ParA2 gradient with maximal concentration toward the poles. This rapid dissociation coupled with slow nucleotide exchange and conformational switch provides for a temporal lag that allows the redistribution of ParA2 to the opposite pole for nucleoid reattachment. Based on our data, we propose a ‘Tug-of-war’ model that uses dynamic oscillations of ParA2 to spatially regulate symmetric segregation and positioning of bacterial chromosomes.
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spelling pubmed-102879102023-06-24 Kinetic principles of ParA2-ATP cycling guide dynamic subcellular localizations in Vibrio cholerae Chodha, Satpal S Brooks, Adam C Davis, Peter J Ramachandran, Revathy Chattoraj, Dhruba K Hwang, Ling Chin Nucleic Acids Res Genome Integrity, Repair and Replication Dynamic protein gradients are exploited for the spatial organization and segregation of replicated chromosomes. However, mechanisms of protein gradient formation and how that spatially organizes chromosomes remain poorly understood. Here, we have determined the kinetic principles of subcellular localizations of ParA2 ATPase, an essential spatial regulator of chromosome 2 segregation in the multichromosome bacterium, Vibrio cholerae. We found that ParA2 gradients self-organize in V. cholerae cells into dynamic pole-to-pole oscillations. We examined the ParA2 ATPase cycle and ParA2 interactions with ParB2 and DNA. In vitro, ParA2-ATP dimers undergo a rate-limiting conformational switch, catalysed by DNA to achieve DNA-binding competence. This active ParA2 state loads onto DNA cooperatively as higher order oligomers. Our results indicate that the midcell localization of ParB2-parS2 complexes stimulate ATP hydrolysis and ParA2 release from the nucleoid, generating an asymmetric ParA2 gradient with maximal concentration toward the poles. This rapid dissociation coupled with slow nucleotide exchange and conformational switch provides for a temporal lag that allows the redistribution of ParA2 to the opposite pole for nucleoid reattachment. Based on our data, we propose a ‘Tug-of-war’ model that uses dynamic oscillations of ParA2 to spatially regulate symmetric segregation and positioning of bacterial chromosomes. Oxford University Press 2023-05-04 /pmc/articles/PMC10287910/ /pubmed/37140034 http://dx.doi.org/10.1093/nar/gkad321 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Integrity, Repair and Replication
Chodha, Satpal S
Brooks, Adam C
Davis, Peter J
Ramachandran, Revathy
Chattoraj, Dhruba K
Hwang, Ling Chin
Kinetic principles of ParA2-ATP cycling guide dynamic subcellular localizations in Vibrio cholerae
title Kinetic principles of ParA2-ATP cycling guide dynamic subcellular localizations in Vibrio cholerae
title_full Kinetic principles of ParA2-ATP cycling guide dynamic subcellular localizations in Vibrio cholerae
title_fullStr Kinetic principles of ParA2-ATP cycling guide dynamic subcellular localizations in Vibrio cholerae
title_full_unstemmed Kinetic principles of ParA2-ATP cycling guide dynamic subcellular localizations in Vibrio cholerae
title_short Kinetic principles of ParA2-ATP cycling guide dynamic subcellular localizations in Vibrio cholerae
title_sort kinetic principles of para2-atp cycling guide dynamic subcellular localizations in vibrio cholerae
topic Genome Integrity, Repair and Replication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10287910/
https://www.ncbi.nlm.nih.gov/pubmed/37140034
http://dx.doi.org/10.1093/nar/gkad321
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