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Differentiation of white matter histopathology using b-tensor encoding and machine learning
Diffusion-weighted magnetic resonance imaging (DW-MRI) is a non-invasive technique that is sensitive to microstructural geometry in neural tissue and is useful for the detection of neuropathology in research and clinical settings. Tensor-valued diffusion encoding schemes (b-tensor) have been develop...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10289327/ https://www.ncbi.nlm.nih.gov/pubmed/37352195 http://dx.doi.org/10.1371/journal.pone.0282549 |
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author | Rios-Carrillo, Ricardo Ramírez-Manzanares, Alonso Luna-Munguía, Hiram Regalado, Mirelta Concha, Luis |
author_facet | Rios-Carrillo, Ricardo Ramírez-Manzanares, Alonso Luna-Munguía, Hiram Regalado, Mirelta Concha, Luis |
author_sort | Rios-Carrillo, Ricardo |
collection | PubMed |
description | Diffusion-weighted magnetic resonance imaging (DW-MRI) is a non-invasive technique that is sensitive to microstructural geometry in neural tissue and is useful for the detection of neuropathology in research and clinical settings. Tensor-valued diffusion encoding schemes (b-tensor) have been developed to enrich the microstructural data that can be obtained through DW-MRI. These advanced methods have proven to be more specific to microstructural properties than conventional DW-MRI acquisitions. Additionally, machine learning methods are particularly useful for the study of multidimensional data sets. In this work, we have tested the reach of b-tensor encoding data analyses with machine learning in different histopathological scenarios. We achieved this in three steps: 1) We induced different levels of white matter damage in rodent optic nerves. 2) We obtained ex vivo DW-MRI data with b-tensor encoding schemes and calculated quantitative metrics using Q-space trajectory imaging. 3) We used a machine learning model to identify the main contributing features and built a voxel-wise probabilistic classification map of histological damage. Our results show that this model is sensitive to characteristics of microstructural damage. In conclusion, b-tensor encoded DW-MRI data analyzed with machine learning methods, have the potential to be further developed for the detection of histopathology and neurodegeneration. |
format | Online Article Text |
id | pubmed-10289327 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-102893272023-06-24 Differentiation of white matter histopathology using b-tensor encoding and machine learning Rios-Carrillo, Ricardo Ramírez-Manzanares, Alonso Luna-Munguía, Hiram Regalado, Mirelta Concha, Luis PLoS One Research Article Diffusion-weighted magnetic resonance imaging (DW-MRI) is a non-invasive technique that is sensitive to microstructural geometry in neural tissue and is useful for the detection of neuropathology in research and clinical settings. Tensor-valued diffusion encoding schemes (b-tensor) have been developed to enrich the microstructural data that can be obtained through DW-MRI. These advanced methods have proven to be more specific to microstructural properties than conventional DW-MRI acquisitions. Additionally, machine learning methods are particularly useful for the study of multidimensional data sets. In this work, we have tested the reach of b-tensor encoding data analyses with machine learning in different histopathological scenarios. We achieved this in three steps: 1) We induced different levels of white matter damage in rodent optic nerves. 2) We obtained ex vivo DW-MRI data with b-tensor encoding schemes and calculated quantitative metrics using Q-space trajectory imaging. 3) We used a machine learning model to identify the main contributing features and built a voxel-wise probabilistic classification map of histological damage. Our results show that this model is sensitive to characteristics of microstructural damage. In conclusion, b-tensor encoded DW-MRI data analyzed with machine learning methods, have the potential to be further developed for the detection of histopathology and neurodegeneration. Public Library of Science 2023-06-23 /pmc/articles/PMC10289327/ /pubmed/37352195 http://dx.doi.org/10.1371/journal.pone.0282549 Text en © 2023 Rios-Carrillo et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Rios-Carrillo, Ricardo Ramírez-Manzanares, Alonso Luna-Munguía, Hiram Regalado, Mirelta Concha, Luis Differentiation of white matter histopathology using b-tensor encoding and machine learning |
title | Differentiation of white matter histopathology using b-tensor encoding and machine learning |
title_full | Differentiation of white matter histopathology using b-tensor encoding and machine learning |
title_fullStr | Differentiation of white matter histopathology using b-tensor encoding and machine learning |
title_full_unstemmed | Differentiation of white matter histopathology using b-tensor encoding and machine learning |
title_short | Differentiation of white matter histopathology using b-tensor encoding and machine learning |
title_sort | differentiation of white matter histopathology using b-tensor encoding and machine learning |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10289327/ https://www.ncbi.nlm.nih.gov/pubmed/37352195 http://dx.doi.org/10.1371/journal.pone.0282549 |
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