Cargando…

Differentiation of white matter histopathology using b-tensor encoding and machine learning

Diffusion-weighted magnetic resonance imaging (DW-MRI) is a non-invasive technique that is sensitive to microstructural geometry in neural tissue and is useful for the detection of neuropathology in research and clinical settings. Tensor-valued diffusion encoding schemes (b-tensor) have been develop...

Descripción completa

Detalles Bibliográficos
Autores principales: Rios-Carrillo, Ricardo, Ramírez-Manzanares, Alonso, Luna-Munguía, Hiram, Regalado, Mirelta, Concha, Luis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10289327/
https://www.ncbi.nlm.nih.gov/pubmed/37352195
http://dx.doi.org/10.1371/journal.pone.0282549
_version_ 1785062252145016832
author Rios-Carrillo, Ricardo
Ramírez-Manzanares, Alonso
Luna-Munguía, Hiram
Regalado, Mirelta
Concha, Luis
author_facet Rios-Carrillo, Ricardo
Ramírez-Manzanares, Alonso
Luna-Munguía, Hiram
Regalado, Mirelta
Concha, Luis
author_sort Rios-Carrillo, Ricardo
collection PubMed
description Diffusion-weighted magnetic resonance imaging (DW-MRI) is a non-invasive technique that is sensitive to microstructural geometry in neural tissue and is useful for the detection of neuropathology in research and clinical settings. Tensor-valued diffusion encoding schemes (b-tensor) have been developed to enrich the microstructural data that can be obtained through DW-MRI. These advanced methods have proven to be more specific to microstructural properties than conventional DW-MRI acquisitions. Additionally, machine learning methods are particularly useful for the study of multidimensional data sets. In this work, we have tested the reach of b-tensor encoding data analyses with machine learning in different histopathological scenarios. We achieved this in three steps: 1) We induced different levels of white matter damage in rodent optic nerves. 2) We obtained ex vivo DW-MRI data with b-tensor encoding schemes and calculated quantitative metrics using Q-space trajectory imaging. 3) We used a machine learning model to identify the main contributing features and built a voxel-wise probabilistic classification map of histological damage. Our results show that this model is sensitive to characteristics of microstructural damage. In conclusion, b-tensor encoded DW-MRI data analyzed with machine learning methods, have the potential to be further developed for the detection of histopathology and neurodegeneration.
format Online
Article
Text
id pubmed-10289327
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-102893272023-06-24 Differentiation of white matter histopathology using b-tensor encoding and machine learning Rios-Carrillo, Ricardo Ramírez-Manzanares, Alonso Luna-Munguía, Hiram Regalado, Mirelta Concha, Luis PLoS One Research Article Diffusion-weighted magnetic resonance imaging (DW-MRI) is a non-invasive technique that is sensitive to microstructural geometry in neural tissue and is useful for the detection of neuropathology in research and clinical settings. Tensor-valued diffusion encoding schemes (b-tensor) have been developed to enrich the microstructural data that can be obtained through DW-MRI. These advanced methods have proven to be more specific to microstructural properties than conventional DW-MRI acquisitions. Additionally, machine learning methods are particularly useful for the study of multidimensional data sets. In this work, we have tested the reach of b-tensor encoding data analyses with machine learning in different histopathological scenarios. We achieved this in three steps: 1) We induced different levels of white matter damage in rodent optic nerves. 2) We obtained ex vivo DW-MRI data with b-tensor encoding schemes and calculated quantitative metrics using Q-space trajectory imaging. 3) We used a machine learning model to identify the main contributing features and built a voxel-wise probabilistic classification map of histological damage. Our results show that this model is sensitive to characteristics of microstructural damage. In conclusion, b-tensor encoded DW-MRI data analyzed with machine learning methods, have the potential to be further developed for the detection of histopathology and neurodegeneration. Public Library of Science 2023-06-23 /pmc/articles/PMC10289327/ /pubmed/37352195 http://dx.doi.org/10.1371/journal.pone.0282549 Text en © 2023 Rios-Carrillo et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Rios-Carrillo, Ricardo
Ramírez-Manzanares, Alonso
Luna-Munguía, Hiram
Regalado, Mirelta
Concha, Luis
Differentiation of white matter histopathology using b-tensor encoding and machine learning
title Differentiation of white matter histopathology using b-tensor encoding and machine learning
title_full Differentiation of white matter histopathology using b-tensor encoding and machine learning
title_fullStr Differentiation of white matter histopathology using b-tensor encoding and machine learning
title_full_unstemmed Differentiation of white matter histopathology using b-tensor encoding and machine learning
title_short Differentiation of white matter histopathology using b-tensor encoding and machine learning
title_sort differentiation of white matter histopathology using b-tensor encoding and machine learning
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10289327/
https://www.ncbi.nlm.nih.gov/pubmed/37352195
http://dx.doi.org/10.1371/journal.pone.0282549
work_keys_str_mv AT rioscarrilloricardo differentiationofwhitematterhistopathologyusingbtensorencodingandmachinelearning
AT ramirezmanzanaresalonso differentiationofwhitematterhistopathologyusingbtensorencodingandmachinelearning
AT lunamunguiahiram differentiationofwhitematterhistopathologyusingbtensorencodingandmachinelearning
AT regaladomirelta differentiationofwhitematterhistopathologyusingbtensorencodingandmachinelearning
AT conchaluis differentiationofwhitematterhistopathologyusingbtensorencodingandmachinelearning