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GATS tag system is compatible with biotin labelling methods for protein analysis

Polypeptide tags and biotin labelling technologies are widely used for protein analyses in biochemistry and cell biology. However, many peptide tag epitopes contain lysine residues (or amino acids) that are masked after biotinylation. Here, we propose the GATS tag system without a lysine residue and...

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Autores principales: Yamada, Kohdai, Soga, Fumiya, Tokunaga, Soh, Nagaoka, Hikaru, Ozawa, Tatsuhiko, Kishi, Hiroyuki, Takashima, Eizo, Sawasaki, Tatsuya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10290147/
https://www.ncbi.nlm.nih.gov/pubmed/37353572
http://dx.doi.org/10.1038/s41598-023-36858-y
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author Yamada, Kohdai
Soga, Fumiya
Tokunaga, Soh
Nagaoka, Hikaru
Ozawa, Tatsuhiko
Kishi, Hiroyuki
Takashima, Eizo
Sawasaki, Tatsuya
author_facet Yamada, Kohdai
Soga, Fumiya
Tokunaga, Soh
Nagaoka, Hikaru
Ozawa, Tatsuhiko
Kishi, Hiroyuki
Takashima, Eizo
Sawasaki, Tatsuya
author_sort Yamada, Kohdai
collection PubMed
description Polypeptide tags and biotin labelling technologies are widely used for protein analyses in biochemistry and cell biology. However, many peptide tag epitopes contain lysine residues (or amino acids) that are masked after biotinylation. Here, we propose the GATS tag system without a lysine residue and with high sensitivity and low non-specific binding using a rabbit monoclonal antibody against Plasmodium falciparum glycosylphosphatidylinositol (GPI)-anchored micronemal antigen (PfGAMA). From 14 monoclonal clones, an Ra3 clone was selected as it recognized an epitope—TLSVGVQNTF—without a lysine residue; this antibody and epitope tag set was called the GATS tag system. Surface plasmon resonance analysis showed that the tag system had a high affinity of 8.71 × 10(–9) M. GATS tag indicated a very low background with remarkably high sensitivity and specificity in immunoblotting using the lysates of mammalian cells. It also showed a high sensitivity for immunoprecipitation and immunostaining of cultured human cells. The tag system was highly sensitive in both biotin labelling methods for proteins using NHS-Sulfo-biotin and BioID (proximity-dependent biotin identification) in the human cells, as opposed to a commercially available tag system having lysine residues, which showed reduced sensitivity. These results showed that the GATS tag system is suitable for methods such as BioID involving labelling lysine residues.
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spelling pubmed-102901472023-06-25 GATS tag system is compatible with biotin labelling methods for protein analysis Yamada, Kohdai Soga, Fumiya Tokunaga, Soh Nagaoka, Hikaru Ozawa, Tatsuhiko Kishi, Hiroyuki Takashima, Eizo Sawasaki, Tatsuya Sci Rep Article Polypeptide tags and biotin labelling technologies are widely used for protein analyses in biochemistry and cell biology. However, many peptide tag epitopes contain lysine residues (or amino acids) that are masked after biotinylation. Here, we propose the GATS tag system without a lysine residue and with high sensitivity and low non-specific binding using a rabbit monoclonal antibody against Plasmodium falciparum glycosylphosphatidylinositol (GPI)-anchored micronemal antigen (PfGAMA). From 14 monoclonal clones, an Ra3 clone was selected as it recognized an epitope—TLSVGVQNTF—without a lysine residue; this antibody and epitope tag set was called the GATS tag system. Surface plasmon resonance analysis showed that the tag system had a high affinity of 8.71 × 10(–9) M. GATS tag indicated a very low background with remarkably high sensitivity and specificity in immunoblotting using the lysates of mammalian cells. It also showed a high sensitivity for immunoprecipitation and immunostaining of cultured human cells. The tag system was highly sensitive in both biotin labelling methods for proteins using NHS-Sulfo-biotin and BioID (proximity-dependent biotin identification) in the human cells, as opposed to a commercially available tag system having lysine residues, which showed reduced sensitivity. These results showed that the GATS tag system is suitable for methods such as BioID involving labelling lysine residues. Nature Publishing Group UK 2023-06-23 /pmc/articles/PMC10290147/ /pubmed/37353572 http://dx.doi.org/10.1038/s41598-023-36858-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Yamada, Kohdai
Soga, Fumiya
Tokunaga, Soh
Nagaoka, Hikaru
Ozawa, Tatsuhiko
Kishi, Hiroyuki
Takashima, Eizo
Sawasaki, Tatsuya
GATS tag system is compatible with biotin labelling methods for protein analysis
title GATS tag system is compatible with biotin labelling methods for protein analysis
title_full GATS tag system is compatible with biotin labelling methods for protein analysis
title_fullStr GATS tag system is compatible with biotin labelling methods for protein analysis
title_full_unstemmed GATS tag system is compatible with biotin labelling methods for protein analysis
title_short GATS tag system is compatible with biotin labelling methods for protein analysis
title_sort gats tag system is compatible with biotin labelling methods for protein analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10290147/
https://www.ncbi.nlm.nih.gov/pubmed/37353572
http://dx.doi.org/10.1038/s41598-023-36858-y
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