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HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs

Hyperspectral Imaging (HSI) is a relatively new medical imaging modality that exploits an area of diagnostic potential formerly untouched. Although exploratory translational and clinical studies exist, no surgical HSI datasets are openly accessible to the general scientific community. To address thi...

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Autores principales: Studier-Fischer, Alexander, Seidlitz, Silvia, Sellner, Jan, Bressan, Marc, Özdemir, Berkin, Ayala, Leonardo, Odenthal, Jan, Knoedler, Samuel, Kowalewski, Karl-Friedrich, Haney, Caelan Max, Salg, Gabriel, Dietrich, Maximilian, Kenngott, Hannes, Gockel, Ines, Hackert, Thilo, Müller-Stich, Beat Peter, Maier-Hein, Lena, Nickel, Felix
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10290660/
https://www.ncbi.nlm.nih.gov/pubmed/37355750
http://dx.doi.org/10.1038/s41597-023-02315-8
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author Studier-Fischer, Alexander
Seidlitz, Silvia
Sellner, Jan
Bressan, Marc
Özdemir, Berkin
Ayala, Leonardo
Odenthal, Jan
Knoedler, Samuel
Kowalewski, Karl-Friedrich
Haney, Caelan Max
Salg, Gabriel
Dietrich, Maximilian
Kenngott, Hannes
Gockel, Ines
Hackert, Thilo
Müller-Stich, Beat Peter
Maier-Hein, Lena
Nickel, Felix
author_facet Studier-Fischer, Alexander
Seidlitz, Silvia
Sellner, Jan
Bressan, Marc
Özdemir, Berkin
Ayala, Leonardo
Odenthal, Jan
Knoedler, Samuel
Kowalewski, Karl-Friedrich
Haney, Caelan Max
Salg, Gabriel
Dietrich, Maximilian
Kenngott, Hannes
Gockel, Ines
Hackert, Thilo
Müller-Stich, Beat Peter
Maier-Hein, Lena
Nickel, Felix
author_sort Studier-Fischer, Alexander
collection PubMed
description Hyperspectral Imaging (HSI) is a relatively new medical imaging modality that exploits an area of diagnostic potential formerly untouched. Although exploratory translational and clinical studies exist, no surgical HSI datasets are openly accessible to the general scientific community. To address this bottleneck, this publication releases HeiPorSPECTRAL (https://www.heiporspectral.org; 10.5281/zenodo.7737674), the first annotated high-quality standardized surgical HSI dataset. It comprises 5,758 spectral images acquired with the TIVITA(®) Tissue and annotated with 20 physiological porcine organs from 8 pigs per organ distributed over a total number of 11 pigs. Each HSI image features a resolution of 480 × 640 pixels acquired over the 500–1000 nm wavelength range. The acquisition protocol has been designed such that the variability of organ spectra as a function of several parameters including the camera angle and the individual can be assessed. A comprehensive technical validation confirmed both the quality of the raw data and the annotations. We envision potential reuse within this dataset, but also its reuse as baseline data for future research questions outside this dataset.
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spelling pubmed-102906602023-06-26 HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs Studier-Fischer, Alexander Seidlitz, Silvia Sellner, Jan Bressan, Marc Özdemir, Berkin Ayala, Leonardo Odenthal, Jan Knoedler, Samuel Kowalewski, Karl-Friedrich Haney, Caelan Max Salg, Gabriel Dietrich, Maximilian Kenngott, Hannes Gockel, Ines Hackert, Thilo Müller-Stich, Beat Peter Maier-Hein, Lena Nickel, Felix Sci Data Data Descriptor Hyperspectral Imaging (HSI) is a relatively new medical imaging modality that exploits an area of diagnostic potential formerly untouched. Although exploratory translational and clinical studies exist, no surgical HSI datasets are openly accessible to the general scientific community. To address this bottleneck, this publication releases HeiPorSPECTRAL (https://www.heiporspectral.org; 10.5281/zenodo.7737674), the first annotated high-quality standardized surgical HSI dataset. It comprises 5,758 spectral images acquired with the TIVITA(®) Tissue and annotated with 20 physiological porcine organs from 8 pigs per organ distributed over a total number of 11 pigs. Each HSI image features a resolution of 480 × 640 pixels acquired over the 500–1000 nm wavelength range. The acquisition protocol has been designed such that the variability of organ spectra as a function of several parameters including the camera angle and the individual can be assessed. A comprehensive technical validation confirmed both the quality of the raw data and the annotations. We envision potential reuse within this dataset, but also its reuse as baseline data for future research questions outside this dataset. Nature Publishing Group UK 2023-06-24 /pmc/articles/PMC10290660/ /pubmed/37355750 http://dx.doi.org/10.1038/s41597-023-02315-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Studier-Fischer, Alexander
Seidlitz, Silvia
Sellner, Jan
Bressan, Marc
Özdemir, Berkin
Ayala, Leonardo
Odenthal, Jan
Knoedler, Samuel
Kowalewski, Karl-Friedrich
Haney, Caelan Max
Salg, Gabriel
Dietrich, Maximilian
Kenngott, Hannes
Gockel, Ines
Hackert, Thilo
Müller-Stich, Beat Peter
Maier-Hein, Lena
Nickel, Felix
HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs
title HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs
title_full HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs
title_fullStr HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs
title_full_unstemmed HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs
title_short HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs
title_sort heiporspectral - the heidelberg porcine hyperspectral imaging dataset of 20 physiological organs
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10290660/
https://www.ncbi.nlm.nih.gov/pubmed/37355750
http://dx.doi.org/10.1038/s41597-023-02315-8
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