Cargando…

Complete genome sequence data of Priestia megaterium strain MARUCO02 isolated from marine mangrove-inhabited sediments of the Indian Ocean in the Bagamoyo Coast

Priestia is a genus of biotechnologically important bacteria adapted to thrive in a wide range of environmental conditions including the marine sediments. Here, we screened and isolated a strain from the Bagamoyo marine mangrove-inhabited sediments and then employed whole genome sequencing to recove...

Descripción completa

Detalles Bibliográficos
Autores principales: Maghembe, Reuben S., Mdoe, France P., Makaranga, Abdalah, Mpemba, James A., Mark, Deogratius, Mlay, Clement, Moto, Edward A., Mtewa, Andrew G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10293923/
https://www.ncbi.nlm.nih.gov/pubmed/37383809
http://dx.doi.org/10.1016/j.dib.2023.109119
_version_ 1785063088902373376
author Maghembe, Reuben S.
Mdoe, France P.
Makaranga, Abdalah
Mpemba, James A.
Mark, Deogratius
Mlay, Clement
Moto, Edward A.
Mtewa, Andrew G.
author_facet Maghembe, Reuben S.
Mdoe, France P.
Makaranga, Abdalah
Mpemba, James A.
Mark, Deogratius
Mlay, Clement
Moto, Edward A.
Mtewa, Andrew G.
author_sort Maghembe, Reuben S.
collection PubMed
description Priestia is a genus of biotechnologically important bacteria adapted to thrive in a wide range of environmental conditions including the marine sediments. Here, we screened and isolated a strain from the Bagamoyo marine mangrove-inhabited sediments and then employed whole genome sequencing to recover and define its full genome. De novo-assembly with Unicycler (v. 0.4.8) and annotation with Prokaryotic Genome Annotation Pipeline (PGAP) revealed that that its genome contains one chromosome (5,549,131 bp), with a GC content of 37.62%. Further analysis showed that the genome contains 5,687 coding sequences (CDS), 4 rRNAs, 84 tRNAs, 12 ncRNAs, and at least 2 plasmids (1,142 bp and 6,490 bp). On the other hand, antiSMASH-based secondary metabolite analysis revealed that the novel strain (MARUCO02) contains gene clusters for biosynthesis of MEP-DOXP-dependent versatile isoprenoids (eg. carotenoids), siderophores (synechobactin and schizokinen) and polyhydroxyalkanoates (PHA). The genome dataset also informs about the presence genes encoding enzymes required for generation of hopanoids, compounds that confer adaption to harsh environmental conditions including industrial cultivation recipes. Our data from this novel Priestia megaterium strain MARUCO02 can be used for reference and in genome-guided selection of strains for production of isoprenoids as well as industrially useful siderophores and polymers, amenable for biosynthetic manipulations in a biotechnological process.
format Online
Article
Text
id pubmed-10293923
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-102939232023-06-28 Complete genome sequence data of Priestia megaterium strain MARUCO02 isolated from marine mangrove-inhabited sediments of the Indian Ocean in the Bagamoyo Coast Maghembe, Reuben S. Mdoe, France P. Makaranga, Abdalah Mpemba, James A. Mark, Deogratius Mlay, Clement Moto, Edward A. Mtewa, Andrew G. Data Brief Data Article Priestia is a genus of biotechnologically important bacteria adapted to thrive in a wide range of environmental conditions including the marine sediments. Here, we screened and isolated a strain from the Bagamoyo marine mangrove-inhabited sediments and then employed whole genome sequencing to recover and define its full genome. De novo-assembly with Unicycler (v. 0.4.8) and annotation with Prokaryotic Genome Annotation Pipeline (PGAP) revealed that that its genome contains one chromosome (5,549,131 bp), with a GC content of 37.62%. Further analysis showed that the genome contains 5,687 coding sequences (CDS), 4 rRNAs, 84 tRNAs, 12 ncRNAs, and at least 2 plasmids (1,142 bp and 6,490 bp). On the other hand, antiSMASH-based secondary metabolite analysis revealed that the novel strain (MARUCO02) contains gene clusters for biosynthesis of MEP-DOXP-dependent versatile isoprenoids (eg. carotenoids), siderophores (synechobactin and schizokinen) and polyhydroxyalkanoates (PHA). The genome dataset also informs about the presence genes encoding enzymes required for generation of hopanoids, compounds that confer adaption to harsh environmental conditions including industrial cultivation recipes. Our data from this novel Priestia megaterium strain MARUCO02 can be used for reference and in genome-guided selection of strains for production of isoprenoids as well as industrially useful siderophores and polymers, amenable for biosynthetic manipulations in a biotechnological process. Elsevier 2023-04-07 /pmc/articles/PMC10293923/ /pubmed/37383809 http://dx.doi.org/10.1016/j.dib.2023.109119 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Maghembe, Reuben S.
Mdoe, France P.
Makaranga, Abdalah
Mpemba, James A.
Mark, Deogratius
Mlay, Clement
Moto, Edward A.
Mtewa, Andrew G.
Complete genome sequence data of Priestia megaterium strain MARUCO02 isolated from marine mangrove-inhabited sediments of the Indian Ocean in the Bagamoyo Coast
title Complete genome sequence data of Priestia megaterium strain MARUCO02 isolated from marine mangrove-inhabited sediments of the Indian Ocean in the Bagamoyo Coast
title_full Complete genome sequence data of Priestia megaterium strain MARUCO02 isolated from marine mangrove-inhabited sediments of the Indian Ocean in the Bagamoyo Coast
title_fullStr Complete genome sequence data of Priestia megaterium strain MARUCO02 isolated from marine mangrove-inhabited sediments of the Indian Ocean in the Bagamoyo Coast
title_full_unstemmed Complete genome sequence data of Priestia megaterium strain MARUCO02 isolated from marine mangrove-inhabited sediments of the Indian Ocean in the Bagamoyo Coast
title_short Complete genome sequence data of Priestia megaterium strain MARUCO02 isolated from marine mangrove-inhabited sediments of the Indian Ocean in the Bagamoyo Coast
title_sort complete genome sequence data of priestia megaterium strain maruco02 isolated from marine mangrove-inhabited sediments of the indian ocean in the bagamoyo coast
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10293923/
https://www.ncbi.nlm.nih.gov/pubmed/37383809
http://dx.doi.org/10.1016/j.dib.2023.109119
work_keys_str_mv AT maghembereubens completegenomesequencedataofpriestiamegateriumstrainmaruco02isolatedfrommarinemangroveinhabitedsedimentsoftheindianoceaninthebagamoyocoast
AT mdoefrancep completegenomesequencedataofpriestiamegateriumstrainmaruco02isolatedfrommarinemangroveinhabitedsedimentsoftheindianoceaninthebagamoyocoast
AT makarangaabdalah completegenomesequencedataofpriestiamegateriumstrainmaruco02isolatedfrommarinemangroveinhabitedsedimentsoftheindianoceaninthebagamoyocoast
AT mpembajamesa completegenomesequencedataofpriestiamegateriumstrainmaruco02isolatedfrommarinemangroveinhabitedsedimentsoftheindianoceaninthebagamoyocoast
AT markdeogratius completegenomesequencedataofpriestiamegateriumstrainmaruco02isolatedfrommarinemangroveinhabitedsedimentsoftheindianoceaninthebagamoyocoast
AT mlayclement completegenomesequencedataofpriestiamegateriumstrainmaruco02isolatedfrommarinemangroveinhabitedsedimentsoftheindianoceaninthebagamoyocoast
AT motoedwarda completegenomesequencedataofpriestiamegateriumstrainmaruco02isolatedfrommarinemangroveinhabitedsedimentsoftheindianoceaninthebagamoyocoast
AT mtewaandrewg completegenomesequencedataofpriestiamegateriumstrainmaruco02isolatedfrommarinemangroveinhabitedsedimentsoftheindianoceaninthebagamoyocoast