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Whole genome sequence data of Streptomyces californicus TBG-201, a chitinolytic actinomycete isolated from the Vandanam sacred groves of Alleppey District, Kerala, India

This study presents the complete genome sequence of Streptomyces californicus TBG-201 isolated from the soil samples of Vandanam sacred groves in Alleppey District, Kerala, India. The organism has potent chitinolytic activity. The genome of S. californicus TBG-201 was sequenced using the Illumina Hi...

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Autores principales: Deepthi, Kumaradasan Sreelatha, Salim, Sajna, Anugraha, Anandhavally Satheesan, Sugathan, Shiburaj
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10293955/
https://www.ncbi.nlm.nih.gov/pubmed/37383735
http://dx.doi.org/10.1016/j.dib.2023.109228
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author Deepthi, Kumaradasan Sreelatha
Salim, Sajna
Anugraha, Anandhavally Satheesan
Sugathan, Shiburaj
author_facet Deepthi, Kumaradasan Sreelatha
Salim, Sajna
Anugraha, Anandhavally Satheesan
Sugathan, Shiburaj
author_sort Deepthi, Kumaradasan Sreelatha
collection PubMed
description This study presents the complete genome sequence of Streptomyces californicus TBG-201 isolated from the soil samples of Vandanam sacred groves in Alleppey District, Kerala, India. The organism has potent chitinolytic activity. The genome of S. californicus TBG-201 was sequenced using the Illumina HiSeq-2500 platform with 2 × 150bp pair-end protocol and assembled using Velvet version 1.2.10.0. The assembled genome has a 7.99 Mb total length, a G+C content of 72.60%, and 6683 protein-coding genes, 116 pseudogenes, 31 rRNAs, and 66 tRNAs. AntiSMASH analysis revealed abundant biosynthetic gene clusters, while the dbCAN meta server was used to detect carbohydrate-active enzyme coding genes. The NCBI Prokaryotic Genome Annotation Pipeline was used for genome annotation. The presence of numerous genes coding for chitin degradation indicates the chitinolytic ability of this strain. The genome data have been deposited in NCBI with the accession number JAJDST000000000.
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spelling pubmed-102939552023-06-28 Whole genome sequence data of Streptomyces californicus TBG-201, a chitinolytic actinomycete isolated from the Vandanam sacred groves of Alleppey District, Kerala, India Deepthi, Kumaradasan Sreelatha Salim, Sajna Anugraha, Anandhavally Satheesan Sugathan, Shiburaj Data Brief Data Article This study presents the complete genome sequence of Streptomyces californicus TBG-201 isolated from the soil samples of Vandanam sacred groves in Alleppey District, Kerala, India. The organism has potent chitinolytic activity. The genome of S. californicus TBG-201 was sequenced using the Illumina HiSeq-2500 platform with 2 × 150bp pair-end protocol and assembled using Velvet version 1.2.10.0. The assembled genome has a 7.99 Mb total length, a G+C content of 72.60%, and 6683 protein-coding genes, 116 pseudogenes, 31 rRNAs, and 66 tRNAs. AntiSMASH analysis revealed abundant biosynthetic gene clusters, while the dbCAN meta server was used to detect carbohydrate-active enzyme coding genes. The NCBI Prokaryotic Genome Annotation Pipeline was used for genome annotation. The presence of numerous genes coding for chitin degradation indicates the chitinolytic ability of this strain. The genome data have been deposited in NCBI with the accession number JAJDST000000000. Elsevier 2023-05-11 /pmc/articles/PMC10293955/ /pubmed/37383735 http://dx.doi.org/10.1016/j.dib.2023.109228 Text en © 2023 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Deepthi, Kumaradasan Sreelatha
Salim, Sajna
Anugraha, Anandhavally Satheesan
Sugathan, Shiburaj
Whole genome sequence data of Streptomyces californicus TBG-201, a chitinolytic actinomycete isolated from the Vandanam sacred groves of Alleppey District, Kerala, India
title Whole genome sequence data of Streptomyces californicus TBG-201, a chitinolytic actinomycete isolated from the Vandanam sacred groves of Alleppey District, Kerala, India
title_full Whole genome sequence data of Streptomyces californicus TBG-201, a chitinolytic actinomycete isolated from the Vandanam sacred groves of Alleppey District, Kerala, India
title_fullStr Whole genome sequence data of Streptomyces californicus TBG-201, a chitinolytic actinomycete isolated from the Vandanam sacred groves of Alleppey District, Kerala, India
title_full_unstemmed Whole genome sequence data of Streptomyces californicus TBG-201, a chitinolytic actinomycete isolated from the Vandanam sacred groves of Alleppey District, Kerala, India
title_short Whole genome sequence data of Streptomyces californicus TBG-201, a chitinolytic actinomycete isolated from the Vandanam sacred groves of Alleppey District, Kerala, India
title_sort whole genome sequence data of streptomyces californicus tbg-201, a chitinolytic actinomycete isolated from the vandanam sacred groves of alleppey district, kerala, india
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10293955/
https://www.ncbi.nlm.nih.gov/pubmed/37383735
http://dx.doi.org/10.1016/j.dib.2023.109228
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