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Characterization of the complete mitogenome data of Ischyja marapok (Lepidoptera: Noctuoidea: Erebidae) from Malaysia

Ischyja marapok is a moth species from the genus Ischyja, a member of the Lepidoptera family, Erebidae. Due to their wide variation, this family constitutes the largest described species, however, the mitogenome dataset on the genus Ischyja is scarce. Hence, the mitochondrial genome dataset of Ischy...

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Autores principales: Miga, Marylin, Jahari, Puteri Nur Syahzanani, Parimannan, Sivachandran, Rajandas, Heera, Abdul-Latiff, Muhammad Abu Bakar, Wei, Yap Jing, Shamsir, Mohd Shahir, Salleh, Faezah Mohd
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10293960/
https://www.ncbi.nlm.nih.gov/pubmed/37383759
http://dx.doi.org/10.1016/j.dib.2023.109253
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author Miga, Marylin
Jahari, Puteri Nur Syahzanani
Parimannan, Sivachandran
Rajandas, Heera
Abdul-Latiff, Muhammad Abu Bakar
Wei, Yap Jing
Shamsir, Mohd Shahir
Salleh, Faezah Mohd
author_facet Miga, Marylin
Jahari, Puteri Nur Syahzanani
Parimannan, Sivachandran
Rajandas, Heera
Abdul-Latiff, Muhammad Abu Bakar
Wei, Yap Jing
Shamsir, Mohd Shahir
Salleh, Faezah Mohd
author_sort Miga, Marylin
collection PubMed
description Ischyja marapok is a moth species from the genus Ischyja, a member of the Lepidoptera family, Erebidae. Due to their wide variation, this family constitutes the largest described species, however, the mitogenome dataset on the genus Ischyja is scarce. Hence, the mitochondrial genome dataset of Ischyja marapok from Malaysia was completely sequenced using the next-generation sequencing technology, Illumina NovaSeq 6000 and analyzed. The mitogenome has a sequence length of 15,421 bp, consisting of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), 2 ribosomal RNAs (rRNAs) and a control region. The mitogenome is A + T biased (80.6%), with the base composition of A (39.2%), T (41.4%), C (11.9%) and G (7.5%). Among the 13 PCGs, 12 were initiated by the standard ATN codon, except for COX1 which utilizes the CGA start codon. Two PCGs were terminated with an incomplete stop codon T, while others ended with a TAA codon. Phylogenetic tree analyses showed that the sequenced I. marapok resides within the Erebinae subfamily and is closely related to Ischyja manlia (MW664367) with high bootstrap support and posterior probabilities. This dataset presented the mitogenome data of I. marapok from Malaysia, which is valuable for further research of their phylogeny and the diversification of the Ischyja genus. Also, this dataset can be implemented and used as references to assess environmental changes in the terrestrial ecosystem via environmental DNA approaches. The mitogenome of I. marapok is available in GenBank under the accession number ON165249.
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spelling pubmed-102939602023-06-28 Characterization of the complete mitogenome data of Ischyja marapok (Lepidoptera: Noctuoidea: Erebidae) from Malaysia Miga, Marylin Jahari, Puteri Nur Syahzanani Parimannan, Sivachandran Rajandas, Heera Abdul-Latiff, Muhammad Abu Bakar Wei, Yap Jing Shamsir, Mohd Shahir Salleh, Faezah Mohd Data Brief Data Article Ischyja marapok is a moth species from the genus Ischyja, a member of the Lepidoptera family, Erebidae. Due to their wide variation, this family constitutes the largest described species, however, the mitogenome dataset on the genus Ischyja is scarce. Hence, the mitochondrial genome dataset of Ischyja marapok from Malaysia was completely sequenced using the next-generation sequencing technology, Illumina NovaSeq 6000 and analyzed. The mitogenome has a sequence length of 15,421 bp, consisting of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), 2 ribosomal RNAs (rRNAs) and a control region. The mitogenome is A + T biased (80.6%), with the base composition of A (39.2%), T (41.4%), C (11.9%) and G (7.5%). Among the 13 PCGs, 12 were initiated by the standard ATN codon, except for COX1 which utilizes the CGA start codon. Two PCGs were terminated with an incomplete stop codon T, while others ended with a TAA codon. Phylogenetic tree analyses showed that the sequenced I. marapok resides within the Erebinae subfamily and is closely related to Ischyja manlia (MW664367) with high bootstrap support and posterior probabilities. This dataset presented the mitogenome data of I. marapok from Malaysia, which is valuable for further research of their phylogeny and the diversification of the Ischyja genus. Also, this dataset can be implemented and used as references to assess environmental changes in the terrestrial ecosystem via environmental DNA approaches. The mitogenome of I. marapok is available in GenBank under the accession number ON165249. Elsevier 2023-05-21 /pmc/articles/PMC10293960/ /pubmed/37383759 http://dx.doi.org/10.1016/j.dib.2023.109253 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Miga, Marylin
Jahari, Puteri Nur Syahzanani
Parimannan, Sivachandran
Rajandas, Heera
Abdul-Latiff, Muhammad Abu Bakar
Wei, Yap Jing
Shamsir, Mohd Shahir
Salleh, Faezah Mohd
Characterization of the complete mitogenome data of Ischyja marapok (Lepidoptera: Noctuoidea: Erebidae) from Malaysia
title Characterization of the complete mitogenome data of Ischyja marapok (Lepidoptera: Noctuoidea: Erebidae) from Malaysia
title_full Characterization of the complete mitogenome data of Ischyja marapok (Lepidoptera: Noctuoidea: Erebidae) from Malaysia
title_fullStr Characterization of the complete mitogenome data of Ischyja marapok (Lepidoptera: Noctuoidea: Erebidae) from Malaysia
title_full_unstemmed Characterization of the complete mitogenome data of Ischyja marapok (Lepidoptera: Noctuoidea: Erebidae) from Malaysia
title_short Characterization of the complete mitogenome data of Ischyja marapok (Lepidoptera: Noctuoidea: Erebidae) from Malaysia
title_sort characterization of the complete mitogenome data of ischyja marapok (lepidoptera: noctuoidea: erebidae) from malaysia
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10293960/
https://www.ncbi.nlm.nih.gov/pubmed/37383759
http://dx.doi.org/10.1016/j.dib.2023.109253
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