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Dataset of de novo transcriptome assembly of Rhizome in Curcuma aeruginosa Roxb
Curcuma aeruginosa Roxb. is an Indonesian traditional medicinal plant of the Zingiberaceae family. C. aeruginosa is known to have anticancer activity, especially in the rhizomes. Despite many studies on the phytochemical content of this plant with antioxidant and anticancer activity, transcriptomic...
| Autores principales: | , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Elsevier
2023
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10293965/ https://www.ncbi.nlm.nih.gov/pubmed/37383824 http://dx.doi.org/10.1016/j.dib.2023.109254 |
| _version_ | 1785063097575145472 |
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| author | Purwoko, Devit Cartealy, Imam Civi Zulaeha, Siti Tajuddin, Teuku Rahmadara, Gemilang Hanifah, Nurul Fitri Hartuti, Endah Dwi Khairiyah, Hayat Pramisandi, Amila Fauzan, Yusuf Sigit Ahmad Suparjo Reninta, Rikania Safarrida, Anna Sobir |
| author_facet | Purwoko, Devit Cartealy, Imam Civi Zulaeha, Siti Tajuddin, Teuku Rahmadara, Gemilang Hanifah, Nurul Fitri Hartuti, Endah Dwi Khairiyah, Hayat Pramisandi, Amila Fauzan, Yusuf Sigit Ahmad Suparjo Reninta, Rikania Safarrida, Anna Sobir |
| author_sort | Purwoko, Devit |
| collection | PubMed |
| description | Curcuma aeruginosa Roxb. is an Indonesian traditional medicinal plant of the Zingiberaceae family. C. aeruginosa is known to have anticancer activity, especially in the rhizomes. Despite many studies on the phytochemical content of this plant with antioxidant and anticancer activity, transcriptomic studies are still limited in terms of genetic information. We ran transcriptome of Curcuma aeruginosa using a paired-end Illumina NextSeq 550 with PE150 mode and generating 12.8 GB of raw data. Raw reads have been filed with NCBI under project number PRJNA918644. This dataset allowed us to identify genes associated with biosynthetic pathways of anticancer drugs. Transcriptome data can also be used to develop new EST-SSR and SNP markers for use in plant breeding programs. |
| format | Online Article Text |
| id | pubmed-10293965 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2023 |
| publisher | Elsevier |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-102939652023-06-28 Dataset of de novo transcriptome assembly of Rhizome in Curcuma aeruginosa Roxb Purwoko, Devit Cartealy, Imam Civi Zulaeha, Siti Tajuddin, Teuku Rahmadara, Gemilang Hanifah, Nurul Fitri Hartuti, Endah Dwi Khairiyah, Hayat Pramisandi, Amila Fauzan, Yusuf Sigit Ahmad Suparjo Reninta, Rikania Safarrida, Anna Sobir Data Brief Data Article Curcuma aeruginosa Roxb. is an Indonesian traditional medicinal plant of the Zingiberaceae family. C. aeruginosa is known to have anticancer activity, especially in the rhizomes. Despite many studies on the phytochemical content of this plant with antioxidant and anticancer activity, transcriptomic studies are still limited in terms of genetic information. We ran transcriptome of Curcuma aeruginosa using a paired-end Illumina NextSeq 550 with PE150 mode and generating 12.8 GB of raw data. Raw reads have been filed with NCBI under project number PRJNA918644. This dataset allowed us to identify genes associated with biosynthetic pathways of anticancer drugs. Transcriptome data can also be used to develop new EST-SSR and SNP markers for use in plant breeding programs. Elsevier 2023-05-23 /pmc/articles/PMC10293965/ /pubmed/37383824 http://dx.doi.org/10.1016/j.dib.2023.109254 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
| spellingShingle | Data Article Purwoko, Devit Cartealy, Imam Civi Zulaeha, Siti Tajuddin, Teuku Rahmadara, Gemilang Hanifah, Nurul Fitri Hartuti, Endah Dwi Khairiyah, Hayat Pramisandi, Amila Fauzan, Yusuf Sigit Ahmad Suparjo Reninta, Rikania Safarrida, Anna Sobir Dataset of de novo transcriptome assembly of Rhizome in Curcuma aeruginosa Roxb |
| title | Dataset of de novo transcriptome assembly of Rhizome in Curcuma aeruginosa Roxb |
| title_full | Dataset of de novo transcriptome assembly of Rhizome in Curcuma aeruginosa Roxb |
| title_fullStr | Dataset of de novo transcriptome assembly of Rhizome in Curcuma aeruginosa Roxb |
| title_full_unstemmed | Dataset of de novo transcriptome assembly of Rhizome in Curcuma aeruginosa Roxb |
| title_short | Dataset of de novo transcriptome assembly of Rhizome in Curcuma aeruginosa Roxb |
| title_sort | dataset of de novo transcriptome assembly of rhizome in curcuma aeruginosa roxb |
| topic | Data Article |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10293965/ https://www.ncbi.nlm.nih.gov/pubmed/37383824 http://dx.doi.org/10.1016/j.dib.2023.109254 |
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