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Dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail (Turnix suscitator)

Turnix suscitator (barred-button quail) is a member of the primitive genus Turnix in the highly diverse order of shore birds Charadriiformes. Absence of genome scale data of T. suscitator has limited our understanding about its systematics, taxonomic and evolutionary history as well has hindered the...

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Autores principales: Dey, Prateek, Ray, Swapna Devi, Pramod, Padmanabhan, Singh, Ram Pratap
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10294100/
https://www.ncbi.nlm.nih.gov/pubmed/37383822
http://dx.doi.org/10.1016/j.dib.2023.109288
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author Dey, Prateek
Ray, Swapna Devi
Pramod, Padmanabhan
Singh, Ram Pratap
author_facet Dey, Prateek
Ray, Swapna Devi
Pramod, Padmanabhan
Singh, Ram Pratap
author_sort Dey, Prateek
collection PubMed
description Turnix suscitator (barred-button quail) is a member of the primitive genus Turnix in the highly diverse order of shore birds Charadriiformes. Absence of genome scale data of T. suscitator has limited our understanding about its systematics, taxonomic and evolutionary history as well has hindered the characterization of genome wide microsatellite markers of the same. Hence we generated whole genome short read sequences of T. suscitator, created a high quality assembly and mined genome-wide microsatellite markers from the same. A total of 34142524 reads were sequenced with an estimated genome size of 817 mb. SPAdes assembly consisted of 320761 total contigs and an estimated N50 value of 907 base pairs. Krait identified a total of 77028 microsatellite motifs covering 0.64% of the total sequences in the SPAdes assembly. Further the whole genome sequence and genome wide microsatellites dataset of T. suscitator will facilitate future genomic/evolutionary studies of Turnix species.
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spelling pubmed-102941002023-06-28 Dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail (Turnix suscitator) Dey, Prateek Ray, Swapna Devi Pramod, Padmanabhan Singh, Ram Pratap Data Brief Data Article Turnix suscitator (barred-button quail) is a member of the primitive genus Turnix in the highly diverse order of shore birds Charadriiformes. Absence of genome scale data of T. suscitator has limited our understanding about its systematics, taxonomic and evolutionary history as well has hindered the characterization of genome wide microsatellite markers of the same. Hence we generated whole genome short read sequences of T. suscitator, created a high quality assembly and mined genome-wide microsatellite markers from the same. A total of 34142524 reads were sequenced with an estimated genome size of 817 mb. SPAdes assembly consisted of 320761 total contigs and an estimated N50 value of 907 base pairs. Krait identified a total of 77028 microsatellite motifs covering 0.64% of the total sequences in the SPAdes assembly. Further the whole genome sequence and genome wide microsatellites dataset of T. suscitator will facilitate future genomic/evolutionary studies of Turnix species. Elsevier 2023-06-01 /pmc/articles/PMC10294100/ /pubmed/37383822 http://dx.doi.org/10.1016/j.dib.2023.109288 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Dey, Prateek
Ray, Swapna Devi
Pramod, Padmanabhan
Singh, Ram Pratap
Dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail (Turnix suscitator)
title Dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail (Turnix suscitator)
title_full Dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail (Turnix suscitator)
title_fullStr Dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail (Turnix suscitator)
title_full_unstemmed Dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail (Turnix suscitator)
title_short Dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail (Turnix suscitator)
title_sort dataset from genome sequencing, assembly and mining of microsatellite markers in barred-button quail (turnix suscitator)
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10294100/
https://www.ncbi.nlm.nih.gov/pubmed/37383822
http://dx.doi.org/10.1016/j.dib.2023.109288
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