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Construction and validation of a prognostic model based on autophagy-related genes for hepatocellular carcinoma in the Asian population

BACKGROUND AND OBJECTIVE: Hepatocellular carcinoma (HCC), which has a complex pathogenesis and poor prognosis, is one of the most common malignancies worldwide. Hepatitis virus B infection is the most common cause of HCC in Asian patients. Autophagy is the process of digestion and degradation, and s...

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Autores principales: Wang, Yanjie, Huang, Sijia, Zhang, Yingtian, Cheng, Yaping, Dai, Liya, Gao, Wenwen, Feng, Zhengyang, Tao, Jialong, Zhang, Yusong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10294479/
https://www.ncbi.nlm.nih.gov/pubmed/37370041
http://dx.doi.org/10.1186/s12864-023-09367-5
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author Wang, Yanjie
Huang, Sijia
Zhang, Yingtian
Cheng, Yaping
Dai, Liya
Gao, Wenwen
Feng, Zhengyang
Tao, Jialong
Zhang, Yusong
author_facet Wang, Yanjie
Huang, Sijia
Zhang, Yingtian
Cheng, Yaping
Dai, Liya
Gao, Wenwen
Feng, Zhengyang
Tao, Jialong
Zhang, Yusong
author_sort Wang, Yanjie
collection PubMed
description BACKGROUND AND OBJECTIVE: Hepatocellular carcinoma (HCC), which has a complex pathogenesis and poor prognosis, is one of the most common malignancies worldwide. Hepatitis virus B infection is the most common cause of HCC in Asian patients. Autophagy is the process of digestion and degradation, and studies have shown that autophagy-associated effects are closely related to the development of HCC. In this study, we aimed to construct a prognostic model based on autophagy-related genes (ARGs) for the Asian HCC population to provide new ideas for the clinical management of HCC in the Asian population. METHODS: The clinical information and transcriptome data of Asian patients with HCC were downloaded from The Cancer Genome Atlas (TCGA) database, and 206 ARGs were downloaded from the human autophagy database (HADB). We performed differential and Cox regression analyses to construct a risk score model. The accuracy of the model was validated by using the Kaplan–Meier (K–M) survival curve, receiver operating characteristic (ROC) curve, and univariate and multivariate Cox independent prognostic analyses. The results Thirteen ARGs that were significantly associated with prognosis were finally identified by univariate and multivariate Cox regression analyses. The K–M survival curves showed that the survival rate of the low-risk group was significantly higher than that of the high-risk group (p < 0.001), and the multi-indicator ROC curves further demonstrated the predictive ability of the model (AUC = 0.877). CONCLUSION: The risk score model based on ARGs was effective in predicting the prognosis of Asian patients with HCC.
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spelling pubmed-102944792023-06-28 Construction and validation of a prognostic model based on autophagy-related genes for hepatocellular carcinoma in the Asian population Wang, Yanjie Huang, Sijia Zhang, Yingtian Cheng, Yaping Dai, Liya Gao, Wenwen Feng, Zhengyang Tao, Jialong Zhang, Yusong BMC Genomics Research BACKGROUND AND OBJECTIVE: Hepatocellular carcinoma (HCC), which has a complex pathogenesis and poor prognosis, is one of the most common malignancies worldwide. Hepatitis virus B infection is the most common cause of HCC in Asian patients. Autophagy is the process of digestion and degradation, and studies have shown that autophagy-associated effects are closely related to the development of HCC. In this study, we aimed to construct a prognostic model based on autophagy-related genes (ARGs) for the Asian HCC population to provide new ideas for the clinical management of HCC in the Asian population. METHODS: The clinical information and transcriptome data of Asian patients with HCC were downloaded from The Cancer Genome Atlas (TCGA) database, and 206 ARGs were downloaded from the human autophagy database (HADB). We performed differential and Cox regression analyses to construct a risk score model. The accuracy of the model was validated by using the Kaplan–Meier (K–M) survival curve, receiver operating characteristic (ROC) curve, and univariate and multivariate Cox independent prognostic analyses. The results Thirteen ARGs that were significantly associated with prognosis were finally identified by univariate and multivariate Cox regression analyses. The K–M survival curves showed that the survival rate of the low-risk group was significantly higher than that of the high-risk group (p < 0.001), and the multi-indicator ROC curves further demonstrated the predictive ability of the model (AUC = 0.877). CONCLUSION: The risk score model based on ARGs was effective in predicting the prognosis of Asian patients with HCC. BioMed Central 2023-06-27 /pmc/articles/PMC10294479/ /pubmed/37370041 http://dx.doi.org/10.1186/s12864-023-09367-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Wang, Yanjie
Huang, Sijia
Zhang, Yingtian
Cheng, Yaping
Dai, Liya
Gao, Wenwen
Feng, Zhengyang
Tao, Jialong
Zhang, Yusong
Construction and validation of a prognostic model based on autophagy-related genes for hepatocellular carcinoma in the Asian population
title Construction and validation of a prognostic model based on autophagy-related genes for hepatocellular carcinoma in the Asian population
title_full Construction and validation of a prognostic model based on autophagy-related genes for hepatocellular carcinoma in the Asian population
title_fullStr Construction and validation of a prognostic model based on autophagy-related genes for hepatocellular carcinoma in the Asian population
title_full_unstemmed Construction and validation of a prognostic model based on autophagy-related genes for hepatocellular carcinoma in the Asian population
title_short Construction and validation of a prognostic model based on autophagy-related genes for hepatocellular carcinoma in the Asian population
title_sort construction and validation of a prognostic model based on autophagy-related genes for hepatocellular carcinoma in the asian population
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10294479/
https://www.ncbi.nlm.nih.gov/pubmed/37370041
http://dx.doi.org/10.1186/s12864-023-09367-5
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