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Biosensor development for single-cell detection of glucuronate
: Recent work in biosensors has shown promise to enable high throughput searches through large genetic libraries. However, just as physiological limitations and lack of in-depth mechanistic knowledge can prevent us from achieving high titers in microbial systems; similar roadblocks can appear in th...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10294642/ https://www.ncbi.nlm.nih.gov/pubmed/37327078 http://dx.doi.org/10.1093/jimb/kuad013 |
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author | Nash, Jennifer Kaczmarek Prather, Kristala L J |
author_facet | Nash, Jennifer Kaczmarek Prather, Kristala L J |
author_sort | Nash, Jennifer Kaczmarek |
collection | PubMed |
description | : Recent work in biosensors has shown promise to enable high throughput searches through large genetic libraries. However, just as physiological limitations and lack of in-depth mechanistic knowledge can prevent us from achieving high titers in microbial systems; similar roadblocks can appear in the application of biosensors. Here, we characterized a previously developed transcription-factor (ExuR) based galacturonate biosensor for its other cognate ligand, glucuronate. Though we saw an ideal response to glucuronate from the biosensor in controlled and ideal experimental circumstances, these results began to deviate from a well-behaved system when we explored the application of the sensor to different MIOX homologs. Through modifications to circuit architecture and culture conditions, we were able to decrease this variation and use these more optimal conditions to apply the biosensor for the separation of two closely related MIOX homologs. ONE-SENTENCE SUMMARY: In this work, a transcription-factor biosensor was investigated for its potential to screen a library of myo -inositol oxygenase variants while seeking to mitigate the impact the production pathway appeared to have on the biosensor. |
format | Online Article Text |
id | pubmed-10294642 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102946422023-06-28 Biosensor development for single-cell detection of glucuronate Nash, Jennifer Kaczmarek Prather, Kristala L J J Ind Microbiol Biotechnol Metabolic Engineering and Synthetic Biology : Recent work in biosensors has shown promise to enable high throughput searches through large genetic libraries. However, just as physiological limitations and lack of in-depth mechanistic knowledge can prevent us from achieving high titers in microbial systems; similar roadblocks can appear in the application of biosensors. Here, we characterized a previously developed transcription-factor (ExuR) based galacturonate biosensor for its other cognate ligand, glucuronate. Though we saw an ideal response to glucuronate from the biosensor in controlled and ideal experimental circumstances, these results began to deviate from a well-behaved system when we explored the application of the sensor to different MIOX homologs. Through modifications to circuit architecture and culture conditions, we were able to decrease this variation and use these more optimal conditions to apply the biosensor for the separation of two closely related MIOX homologs. ONE-SENTENCE SUMMARY: In this work, a transcription-factor biosensor was investigated for its potential to screen a library of myo -inositol oxygenase variants while seeking to mitigate the impact the production pathway appeared to have on the biosensor. Oxford University Press 2023-06-16 /pmc/articles/PMC10294642/ /pubmed/37327078 http://dx.doi.org/10.1093/jimb/kuad013 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Society of Industrial Microbiology and Biotechnology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Metabolic Engineering and Synthetic Biology Nash, Jennifer Kaczmarek Prather, Kristala L J Biosensor development for single-cell detection of glucuronate |
title | Biosensor development for single-cell detection of glucuronate |
title_full | Biosensor development for single-cell detection of glucuronate |
title_fullStr | Biosensor development for single-cell detection of glucuronate |
title_full_unstemmed | Biosensor development for single-cell detection of glucuronate |
title_short | Biosensor development for single-cell detection of glucuronate |
title_sort | biosensor development for single-cell detection of glucuronate |
topic | Metabolic Engineering and Synthetic Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10294642/ https://www.ncbi.nlm.nih.gov/pubmed/37327078 http://dx.doi.org/10.1093/jimb/kuad013 |
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