Cargando…

Biosensor development for single-cell detection of glucuronate

 : Recent work in biosensors has shown promise to enable high throughput searches through large genetic libraries. However, just as physiological limitations and lack of in-depth mechanistic knowledge can prevent us from achieving high titers in microbial systems; similar roadblocks can appear in th...

Descripción completa

Detalles Bibliográficos
Autores principales: Nash, Jennifer Kaczmarek, Prather, Kristala L J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10294642/
https://www.ncbi.nlm.nih.gov/pubmed/37327078
http://dx.doi.org/10.1093/jimb/kuad013
_version_ 1785063235013050368
author Nash, Jennifer Kaczmarek
Prather, Kristala L J
author_facet Nash, Jennifer Kaczmarek
Prather, Kristala L J
author_sort Nash, Jennifer Kaczmarek
collection PubMed
description  : Recent work in biosensors has shown promise to enable high throughput searches through large genetic libraries. However, just as physiological limitations and lack of in-depth mechanistic knowledge can prevent us from achieving high titers in microbial systems; similar roadblocks can appear in the application of biosensors. Here, we characterized a previously developed transcription-factor (ExuR) based galacturonate biosensor for its other cognate ligand, glucuronate. Though we saw an ideal response to glucuronate from the biosensor in controlled and ideal experimental circumstances, these results began to deviate from a well-behaved system when we explored the application of the sensor to different MIOX homologs. Through modifications to circuit architecture and culture conditions, we were able to decrease this variation and use these more optimal conditions to apply the biosensor for the separation of two closely related MIOX homologs. ONE-SENTENCE SUMMARY: In this work, a transcription-factor biosensor was investigated for its potential to screen a library of myo -inositol oxygenase variants while seeking to mitigate the impact the production pathway appeared to have on the biosensor.
format Online
Article
Text
id pubmed-10294642
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-102946422023-06-28 Biosensor development for single-cell detection of glucuronate Nash, Jennifer Kaczmarek Prather, Kristala L J J Ind Microbiol Biotechnol Metabolic Engineering and Synthetic Biology  : Recent work in biosensors has shown promise to enable high throughput searches through large genetic libraries. However, just as physiological limitations and lack of in-depth mechanistic knowledge can prevent us from achieving high titers in microbial systems; similar roadblocks can appear in the application of biosensors. Here, we characterized a previously developed transcription-factor (ExuR) based galacturonate biosensor for its other cognate ligand, glucuronate. Though we saw an ideal response to glucuronate from the biosensor in controlled and ideal experimental circumstances, these results began to deviate from a well-behaved system when we explored the application of the sensor to different MIOX homologs. Through modifications to circuit architecture and culture conditions, we were able to decrease this variation and use these more optimal conditions to apply the biosensor for the separation of two closely related MIOX homologs. ONE-SENTENCE SUMMARY: In this work, a transcription-factor biosensor was investigated for its potential to screen a library of myo -inositol oxygenase variants while seeking to mitigate the impact the production pathway appeared to have on the biosensor. Oxford University Press 2023-06-16 /pmc/articles/PMC10294642/ /pubmed/37327078 http://dx.doi.org/10.1093/jimb/kuad013 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Society of Industrial Microbiology and Biotechnology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Metabolic Engineering and Synthetic Biology
Nash, Jennifer Kaczmarek
Prather, Kristala L J
Biosensor development for single-cell detection of glucuronate
title Biosensor development for single-cell detection of glucuronate
title_full Biosensor development for single-cell detection of glucuronate
title_fullStr Biosensor development for single-cell detection of glucuronate
title_full_unstemmed Biosensor development for single-cell detection of glucuronate
title_short Biosensor development for single-cell detection of glucuronate
title_sort biosensor development for single-cell detection of glucuronate
topic Metabolic Engineering and Synthetic Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10294642/
https://www.ncbi.nlm.nih.gov/pubmed/37327078
http://dx.doi.org/10.1093/jimb/kuad013
work_keys_str_mv AT nashjenniferkaczmarek biosensordevelopmentforsinglecelldetectionofglucuronate
AT pratherkristalalj biosensordevelopmentforsinglecelldetectionofglucuronate