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Improving performance robustness of subject-based brain segmentation software
PURPOSE: Artificial intelligence (AI)-based image analysis tools to quantify the brain have become commercialized. However, insufficient data for learning and scanner specificity is a limitation for achieving high quality. In the present study, the performance of personalized brain segmentation soft...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Korean Encephalitis and Neuroinflammation Society
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10295817/ https://www.ncbi.nlm.nih.gov/pubmed/37469714 http://dx.doi.org/10.47936/encephalitis.2022.00108 |
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author | Park, Jong-Hyeok Park, Kyung-Il Kim, Dongmin Lee, Myungjae Kang, Shinuk Kang, Seung Joo Yoon, Dae Hyun |
author_facet | Park, Jong-Hyeok Park, Kyung-Il Kim, Dongmin Lee, Myungjae Kang, Shinuk Kang, Seung Joo Yoon, Dae Hyun |
author_sort | Park, Jong-Hyeok |
collection | PubMed |
description | PURPOSE: Artificial intelligence (AI)-based image analysis tools to quantify the brain have become commercialized. However, insufficient data for learning and scanner specificity is a limitation for achieving high quality. In the present study, the performance of personalized brain segmentation software when applied to multicenter data using an AI model trained on data from a single institution was improved. METHODS: Preindicators of brain white matter (WM) information from the training dataset were utilized for preprocessing. During learning, data of cognitively normal (CN) individuals from a single center were utilized, and data of CN individuals and Alzheimer disease (AD) patients enrolled in multiple centers were considered the test set. RESULTS: The preprocessing based on the preindicator (dice similarity coefficient [DSC], 0.8567) resulted in a better performance than without (DSC, 0.7921). The standard deviation (SD) of the WM region intensity (DSC, 0.8303) had a more substantial influence on the performance than the average intensity (DSC, 0.6591). When the SD of the test data WM intensity was smaller than the learning data, the performance improved (0.03 increase in lower SD, 0.05 decrease in higher SD). Furthermore, preindicator-based pretreatment increased the correlation of mean cortical thickness of the entire gray matter between Atroscan and FreeSurfer, and data augmentation without preprocessing did not.Both preindicator processing and data augmentation improved the correlation coefficient from 0.7584 to 0.8165. CONCLUSION: Data augmentation and preindicator-based preprocessing of training data can improve the performance of AI-based brain segmentation software, both increasing the generalizability and stability of brain segmentation software. |
format | Online Article Text |
id | pubmed-10295817 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Korean Encephalitis and Neuroinflammation Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-102958172023-07-19 Improving performance robustness of subject-based brain segmentation software Park, Jong-Hyeok Park, Kyung-Il Kim, Dongmin Lee, Myungjae Kang, Shinuk Kang, Seung Joo Yoon, Dae Hyun Encephalitis Original Article PURPOSE: Artificial intelligence (AI)-based image analysis tools to quantify the brain have become commercialized. However, insufficient data for learning and scanner specificity is a limitation for achieving high quality. In the present study, the performance of personalized brain segmentation software when applied to multicenter data using an AI model trained on data from a single institution was improved. METHODS: Preindicators of brain white matter (WM) information from the training dataset were utilized for preprocessing. During learning, data of cognitively normal (CN) individuals from a single center were utilized, and data of CN individuals and Alzheimer disease (AD) patients enrolled in multiple centers were considered the test set. RESULTS: The preprocessing based on the preindicator (dice similarity coefficient [DSC], 0.8567) resulted in a better performance than without (DSC, 0.7921). The standard deviation (SD) of the WM region intensity (DSC, 0.8303) had a more substantial influence on the performance than the average intensity (DSC, 0.6591). When the SD of the test data WM intensity was smaller than the learning data, the performance improved (0.03 increase in lower SD, 0.05 decrease in higher SD). Furthermore, preindicator-based pretreatment increased the correlation of mean cortical thickness of the entire gray matter between Atroscan and FreeSurfer, and data augmentation without preprocessing did not.Both preindicator processing and data augmentation improved the correlation coefficient from 0.7584 to 0.8165. CONCLUSION: Data augmentation and preindicator-based preprocessing of training data can improve the performance of AI-based brain segmentation software, both increasing the generalizability and stability of brain segmentation software. Korean Encephalitis and Neuroinflammation Society 2023-01 2023-01-06 /pmc/articles/PMC10295817/ /pubmed/37469714 http://dx.doi.org/10.47936/encephalitis.2022.00108 Text en Copyright © 2023 Korean Encephalitis and Neuroinflammation Society https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Park, Jong-Hyeok Park, Kyung-Il Kim, Dongmin Lee, Myungjae Kang, Shinuk Kang, Seung Joo Yoon, Dae Hyun Improving performance robustness of subject-based brain segmentation software |
title | Improving performance robustness of subject-based brain segmentation software |
title_full | Improving performance robustness of subject-based brain segmentation software |
title_fullStr | Improving performance robustness of subject-based brain segmentation software |
title_full_unstemmed | Improving performance robustness of subject-based brain segmentation software |
title_short | Improving performance robustness of subject-based brain segmentation software |
title_sort | improving performance robustness of subject-based brain segmentation software |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10295817/ https://www.ncbi.nlm.nih.gov/pubmed/37469714 http://dx.doi.org/10.47936/encephalitis.2022.00108 |
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