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Deeper Exploiting Graph Structure Information by Discrete Ricci Curvature in a Graph Transformer
Graph-structured data, operating as an abstraction of data containing nodes and interactions between nodes, is pervasive in the real world. There are numerous ways dedicated to extract graph structure information explicitly or implicitly, but whether it has been adequately exploited remains an unans...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10297634/ https://www.ncbi.nlm.nih.gov/pubmed/37372229 http://dx.doi.org/10.3390/e25060885 |
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author | Lai, Xin Liu, Yang Qian, Rui Lin, Yong Ye, Qiwei |
author_facet | Lai, Xin Liu, Yang Qian, Rui Lin, Yong Ye, Qiwei |
author_sort | Lai, Xin |
collection | PubMed |
description | Graph-structured data, operating as an abstraction of data containing nodes and interactions between nodes, is pervasive in the real world. There are numerous ways dedicated to extract graph structure information explicitly or implicitly, but whether it has been adequately exploited remains an unanswered question. This work goes deeper by heuristically incorporating a geometric descriptor, the discrete Ricci curvature (DRC), in order to uncover more graph structure information. We present a curvature-based topology-aware graph transformer, termed Curvphormer. This work expands the expressiveness by using a more illuminating geometric descriptor to quantify the connections within graphs in modern models and to extract the desired structure information, such as the inherent community structure in graphs with homogeneous information. We conduct extensive experiments on a variety of scaled datasets, including PCQM4M-LSC, ZINC, and MolHIV, and obtain a remarkable performance gain on various graph-level tasks and fine-tuned tasks. |
format | Online Article Text |
id | pubmed-10297634 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-102976342023-06-28 Deeper Exploiting Graph Structure Information by Discrete Ricci Curvature in a Graph Transformer Lai, Xin Liu, Yang Qian, Rui Lin, Yong Ye, Qiwei Entropy (Basel) Article Graph-structured data, operating as an abstraction of data containing nodes and interactions between nodes, is pervasive in the real world. There are numerous ways dedicated to extract graph structure information explicitly or implicitly, but whether it has been adequately exploited remains an unanswered question. This work goes deeper by heuristically incorporating a geometric descriptor, the discrete Ricci curvature (DRC), in order to uncover more graph structure information. We present a curvature-based topology-aware graph transformer, termed Curvphormer. This work expands the expressiveness by using a more illuminating geometric descriptor to quantify the connections within graphs in modern models and to extract the desired structure information, such as the inherent community structure in graphs with homogeneous information. We conduct extensive experiments on a variety of scaled datasets, including PCQM4M-LSC, ZINC, and MolHIV, and obtain a remarkable performance gain on various graph-level tasks and fine-tuned tasks. MDPI 2023-06-01 /pmc/articles/PMC10297634/ /pubmed/37372229 http://dx.doi.org/10.3390/e25060885 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Lai, Xin Liu, Yang Qian, Rui Lin, Yong Ye, Qiwei Deeper Exploiting Graph Structure Information by Discrete Ricci Curvature in a Graph Transformer |
title | Deeper Exploiting Graph Structure Information by Discrete Ricci Curvature in a Graph Transformer |
title_full | Deeper Exploiting Graph Structure Information by Discrete Ricci Curvature in a Graph Transformer |
title_fullStr | Deeper Exploiting Graph Structure Information by Discrete Ricci Curvature in a Graph Transformer |
title_full_unstemmed | Deeper Exploiting Graph Structure Information by Discrete Ricci Curvature in a Graph Transformer |
title_short | Deeper Exploiting Graph Structure Information by Discrete Ricci Curvature in a Graph Transformer |
title_sort | deeper exploiting graph structure information by discrete ricci curvature in a graph transformer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10297634/ https://www.ncbi.nlm.nih.gov/pubmed/37372229 http://dx.doi.org/10.3390/e25060885 |
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