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Riskscore Model Based on Oxidative Stress–Related Genes May Facilitate the Prognosis Evaluation for Patients With Colon Cancer
This study aims to identify the oxidative stress–related genes (OSRGs) with prognostic value and develop a riskscore model for prognosis evaluation in colon cancer. METHODS: The transcriptome data and corresponding clinical information about colon cancer were extracted from The Cancer Genome Atlas d...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Wolters Kluwer
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10299772/ https://www.ncbi.nlm.nih.gov/pubmed/36927989 http://dx.doi.org/10.14309/ctg.0000000000000582 |
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author | Chu, Yuxin Yao, Yi Hu, Qinyong Song, Qibin |
author_facet | Chu, Yuxin Yao, Yi Hu, Qinyong Song, Qibin |
author_sort | Chu, Yuxin |
collection | PubMed |
description | This study aims to identify the oxidative stress–related genes (OSRGs) with prognostic value and develop a riskscore model for prognosis evaluation in colon cancer. METHODS: The transcriptome data and corresponding clinical information about colon cancer were extracted from The Cancer Genome Atlas database. Differentially expressed OSRGs and transcription factors (TFs) were identified between the normal and tumor samples. A riskscore model was established with OSRGs filtered from Cox regression analysis. This riskscore model was appraised by Kaplan-Meier plot, receiver operating characteristic curve, and Cox regression analysis. The clinical relevance of riskscore and its association with immune cell infiltration were also evaluated. RESULTS: A total of 307 differentially expressed OSRGs and 64 differential TFs were identified. A TF-OSRG regulatory network was constructed in Cytoscape software. A riskscore model was established based on 17 OSRGs with independent prognostic value. This riskscore model could separate the patients into low-risk and high-risk groups. It also had good predictive ability, with an area under the curve = 0.8. In multivariate Cox regression analysis, age, T stage, and riskscore were identified as independent risk factors in colon cancer. Riskscore was significantly correlated with T stage, N stage, and immune cell infiltration. DISCUSSION: We established a useful riskscore model with 17 OSRGs for prognosticating the overall survival in patients with colon cancer. This study provides a new insight into the clinical utility of OSRG-based riskscore model, which will hopefully facilitate the prognosis evaluation of patients with colon cancer. |
format | Online Article Text |
id | pubmed-10299772 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Wolters Kluwer |
record_format | MEDLINE/PubMed |
spelling | pubmed-102997722023-06-28 Riskscore Model Based on Oxidative Stress–Related Genes May Facilitate the Prognosis Evaluation for Patients With Colon Cancer Chu, Yuxin Yao, Yi Hu, Qinyong Song, Qibin Clin Transl Gastroenterol Article This study aims to identify the oxidative stress–related genes (OSRGs) with prognostic value and develop a riskscore model for prognosis evaluation in colon cancer. METHODS: The transcriptome data and corresponding clinical information about colon cancer were extracted from The Cancer Genome Atlas database. Differentially expressed OSRGs and transcription factors (TFs) were identified between the normal and tumor samples. A riskscore model was established with OSRGs filtered from Cox regression analysis. This riskscore model was appraised by Kaplan-Meier plot, receiver operating characteristic curve, and Cox regression analysis. The clinical relevance of riskscore and its association with immune cell infiltration were also evaluated. RESULTS: A total of 307 differentially expressed OSRGs and 64 differential TFs were identified. A TF-OSRG regulatory network was constructed in Cytoscape software. A riskscore model was established based on 17 OSRGs with independent prognostic value. This riskscore model could separate the patients into low-risk and high-risk groups. It also had good predictive ability, with an area under the curve = 0.8. In multivariate Cox regression analysis, age, T stage, and riskscore were identified as independent risk factors in colon cancer. Riskscore was significantly correlated with T stage, N stage, and immune cell infiltration. DISCUSSION: We established a useful riskscore model with 17 OSRGs for prognosticating the overall survival in patients with colon cancer. This study provides a new insight into the clinical utility of OSRG-based riskscore model, which will hopefully facilitate the prognosis evaluation of patients with colon cancer. Wolters Kluwer 2023-03-16 /pmc/articles/PMC10299772/ /pubmed/36927989 http://dx.doi.org/10.14309/ctg.0000000000000582 Text en © 2023 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of The American College of Gastroenterology https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution-Non Commercial-No Derivatives License 4.0 (CCBY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) , where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially without permission from the journal. |
spellingShingle | Article Chu, Yuxin Yao, Yi Hu, Qinyong Song, Qibin Riskscore Model Based on Oxidative Stress–Related Genes May Facilitate the Prognosis Evaluation for Patients With Colon Cancer |
title | Riskscore Model Based on Oxidative Stress–Related Genes May Facilitate the Prognosis Evaluation for Patients With Colon Cancer |
title_full | Riskscore Model Based on Oxidative Stress–Related Genes May Facilitate the Prognosis Evaluation for Patients With Colon Cancer |
title_fullStr | Riskscore Model Based on Oxidative Stress–Related Genes May Facilitate the Prognosis Evaluation for Patients With Colon Cancer |
title_full_unstemmed | Riskscore Model Based on Oxidative Stress–Related Genes May Facilitate the Prognosis Evaluation for Patients With Colon Cancer |
title_short | Riskscore Model Based on Oxidative Stress–Related Genes May Facilitate the Prognosis Evaluation for Patients With Colon Cancer |
title_sort | riskscore model based on oxidative stress–related genes may facilitate the prognosis evaluation for patients with colon cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10299772/ https://www.ncbi.nlm.nih.gov/pubmed/36927989 http://dx.doi.org/10.14309/ctg.0000000000000582 |
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