Cargando…

Integrated Bioinformatics Investigation of Novel Biomarkers of Uterine Leiomyosarcoma Diagnosis and Outcome

Uterine leiomyosarcomas (uLMS) have a poor prognosis and a high percentage of recurrent disease. Bioinformatics has become an integral element in rare cancer studies by overcoming the inability to collect a large enough study population. This study aimed to investigate and highlight crucial genes, p...

Descripción completa

Detalles Bibliográficos
Autores principales: Rakic, Aleksandar, Anicic, Radomir, Rakic, Marija, Nejkovic, Lazar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10302315/
https://www.ncbi.nlm.nih.gov/pubmed/37373974
http://dx.doi.org/10.3390/jpm13060985
_version_ 1785065018474102784
author Rakic, Aleksandar
Anicic, Radomir
Rakic, Marija
Nejkovic, Lazar
author_facet Rakic, Aleksandar
Anicic, Radomir
Rakic, Marija
Nejkovic, Lazar
author_sort Rakic, Aleksandar
collection PubMed
description Uterine leiomyosarcomas (uLMS) have a poor prognosis and a high percentage of recurrent disease. Bioinformatics has become an integral element in rare cancer studies by overcoming the inability to collect a large enough study population. This study aimed to investigate and highlight crucial genes, pathways, miRNAs, and transcriptional factors (TF) on uLMS samples from five Gene Expression Omnibus datasets and The Cancer Genome Atlas Sarcoma study. Forty-one common differentially expressed genes (DEGs) were enriched and annotated by the DAVID software. With protein–protein interaction (PPI) network analysis, we selected ten hub genes that were validated with the TNMplotter web tool. We used the USCS Xena browser for survival analysis. We also predicted TF-gene and miRNA-gene regulatory networks along with potential drug molecules. TYMS and TK1 correlated with overall survival in uLMS patients. Finally, our results propose further validation of hub genes (TYMS and TK1), miR-26b-5p, and Sp1 as biomarkers of pathogenesis, prognosis, and differentiation of uLMS. Regarding the aggressive behavior and poor prognosis of uLMS, with the lack of standard therapeutic regimens, in our opinion, the results of our study provide enough evidence for further investigation of the molecular basis of uLMS occurrence and its implication in the diagnosis and therapy of this rare gynecological malignancy.
format Online
Article
Text
id pubmed-10302315
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-103023152023-06-29 Integrated Bioinformatics Investigation of Novel Biomarkers of Uterine Leiomyosarcoma Diagnosis and Outcome Rakic, Aleksandar Anicic, Radomir Rakic, Marija Nejkovic, Lazar J Pers Med Article Uterine leiomyosarcomas (uLMS) have a poor prognosis and a high percentage of recurrent disease. Bioinformatics has become an integral element in rare cancer studies by overcoming the inability to collect a large enough study population. This study aimed to investigate and highlight crucial genes, pathways, miRNAs, and transcriptional factors (TF) on uLMS samples from five Gene Expression Omnibus datasets and The Cancer Genome Atlas Sarcoma study. Forty-one common differentially expressed genes (DEGs) were enriched and annotated by the DAVID software. With protein–protein interaction (PPI) network analysis, we selected ten hub genes that were validated with the TNMplotter web tool. We used the USCS Xena browser for survival analysis. We also predicted TF-gene and miRNA-gene regulatory networks along with potential drug molecules. TYMS and TK1 correlated with overall survival in uLMS patients. Finally, our results propose further validation of hub genes (TYMS and TK1), miR-26b-5p, and Sp1 as biomarkers of pathogenesis, prognosis, and differentiation of uLMS. Regarding the aggressive behavior and poor prognosis of uLMS, with the lack of standard therapeutic regimens, in our opinion, the results of our study provide enough evidence for further investigation of the molecular basis of uLMS occurrence and its implication in the diagnosis and therapy of this rare gynecological malignancy. MDPI 2023-06-13 /pmc/articles/PMC10302315/ /pubmed/37373974 http://dx.doi.org/10.3390/jpm13060985 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Rakic, Aleksandar
Anicic, Radomir
Rakic, Marija
Nejkovic, Lazar
Integrated Bioinformatics Investigation of Novel Biomarkers of Uterine Leiomyosarcoma Diagnosis and Outcome
title Integrated Bioinformatics Investigation of Novel Biomarkers of Uterine Leiomyosarcoma Diagnosis and Outcome
title_full Integrated Bioinformatics Investigation of Novel Biomarkers of Uterine Leiomyosarcoma Diagnosis and Outcome
title_fullStr Integrated Bioinformatics Investigation of Novel Biomarkers of Uterine Leiomyosarcoma Diagnosis and Outcome
title_full_unstemmed Integrated Bioinformatics Investigation of Novel Biomarkers of Uterine Leiomyosarcoma Diagnosis and Outcome
title_short Integrated Bioinformatics Investigation of Novel Biomarkers of Uterine Leiomyosarcoma Diagnosis and Outcome
title_sort integrated bioinformatics investigation of novel biomarkers of uterine leiomyosarcoma diagnosis and outcome
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10302315/
https://www.ncbi.nlm.nih.gov/pubmed/37373974
http://dx.doi.org/10.3390/jpm13060985
work_keys_str_mv AT rakicaleksandar integratedbioinformaticsinvestigationofnovelbiomarkersofuterineleiomyosarcomadiagnosisandoutcome
AT anicicradomir integratedbioinformaticsinvestigationofnovelbiomarkersofuterineleiomyosarcomadiagnosisandoutcome
AT rakicmarija integratedbioinformaticsinvestigationofnovelbiomarkersofuterineleiomyosarcomadiagnosisandoutcome
AT nejkoviclazar integratedbioinformaticsinvestigationofnovelbiomarkersofuterineleiomyosarcomadiagnosisandoutcome