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Modular Software for Generating and Modeling Diverse Polymer Databases
[Image: see text] Machine learning methods offer the opportunity to design new functional materials on an unprecedented scale; however, building the large, diverse databases of molecules on which to train such methods remains a daunting task. Automated computational chemistry modeling workflows are...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10302471/ https://www.ncbi.nlm.nih.gov/pubmed/37288782 http://dx.doi.org/10.1021/acs.jcim.3c00081 |
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author | Santana-Bonilla, Alejandro López-Ríos de Castro, Raquel Sun, Peike Ziolek, Robert M. Lorenz, Christian D. |
author_facet | Santana-Bonilla, Alejandro López-Ríos de Castro, Raquel Sun, Peike Ziolek, Robert M. Lorenz, Christian D. |
author_sort | Santana-Bonilla, Alejandro |
collection | PubMed |
description | [Image: see text] Machine learning methods offer the opportunity to design new functional materials on an unprecedented scale; however, building the large, diverse databases of molecules on which to train such methods remains a daunting task. Automated computational chemistry modeling workflows are therefore becoming essential tools in this data-driven hunt for new materials with novel properties, since they offer a means by which to create and curate molecular databases without requiring significant levels of user input. This ensures that well-founded concerns regarding data provenance, reproducibility, and replicability are mitigated. We have developed a versatile and flexible software package, PySoftK (Python Soft Matter at King’s College London) that provides flexible, automated computational workflows to create, model, and curate libraries of polymers with minimal user intervention. PySoftK is available as an efficient, fully tested, and easily installable Python package. Key features of the software include the wide range of different polymer topologies that can be automatically generated and its fully parallelized library generation tools. It is anticipated that PySoftK will support the generation, modeling, and curation of large polymer libraries to support functional materials discovery in the nanotechnology and biotechnology arenas. |
format | Online Article Text |
id | pubmed-10302471 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-103024712023-06-29 Modular Software for Generating and Modeling Diverse Polymer Databases Santana-Bonilla, Alejandro López-Ríos de Castro, Raquel Sun, Peike Ziolek, Robert M. Lorenz, Christian D. J Chem Inf Model [Image: see text] Machine learning methods offer the opportunity to design new functional materials on an unprecedented scale; however, building the large, diverse databases of molecules on which to train such methods remains a daunting task. Automated computational chemistry modeling workflows are therefore becoming essential tools in this data-driven hunt for new materials with novel properties, since they offer a means by which to create and curate molecular databases without requiring significant levels of user input. This ensures that well-founded concerns regarding data provenance, reproducibility, and replicability are mitigated. We have developed a versatile and flexible software package, PySoftK (Python Soft Matter at King’s College London) that provides flexible, automated computational workflows to create, model, and curate libraries of polymers with minimal user intervention. PySoftK is available as an efficient, fully tested, and easily installable Python package. Key features of the software include the wide range of different polymer topologies that can be automatically generated and its fully parallelized library generation tools. It is anticipated that PySoftK will support the generation, modeling, and curation of large polymer libraries to support functional materials discovery in the nanotechnology and biotechnology arenas. American Chemical Society 2023-06-08 /pmc/articles/PMC10302471/ /pubmed/37288782 http://dx.doi.org/10.1021/acs.jcim.3c00081 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Santana-Bonilla, Alejandro López-Ríos de Castro, Raquel Sun, Peike Ziolek, Robert M. Lorenz, Christian D. Modular Software for Generating and Modeling Diverse Polymer Databases |
title | Modular Software
for Generating and Modeling Diverse
Polymer Databases |
title_full | Modular Software
for Generating and Modeling Diverse
Polymer Databases |
title_fullStr | Modular Software
for Generating and Modeling Diverse
Polymer Databases |
title_full_unstemmed | Modular Software
for Generating and Modeling Diverse
Polymer Databases |
title_short | Modular Software
for Generating and Modeling Diverse
Polymer Databases |
title_sort | modular software
for generating and modeling diverse
polymer databases |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10302471/ https://www.ncbi.nlm.nih.gov/pubmed/37288782 http://dx.doi.org/10.1021/acs.jcim.3c00081 |
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