Cargando…

Direct Nanopore Sequencing of Human Cytomegalovirus Genomes from High-Viral-Load Clinical Samples

Nanopore sequencing is becoming increasingly commonplace in clinical settings, particularly for diagnostic assessments and outbreak investigations, due to its portability, low cost, and ability to operate in near real-time. Although high sequencing error rates initially hampered the wider implementa...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Kathy K., Lau, Betty, Suárez, Nicolás M., Camiolo, Salvatore, Gunson, Rory, Davison, Andrew J., Orton, Richard J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10303703/ https://www.ncbi.nlm.nih.gov/pubmed/37376548 http://dx.doi.org/10.3390/v15061248

Ejemplares similares

GRACy: A tool for analysing human cytomegalovirus sequence data
por: Camiolo, Salvatore, et al.
Publicado: (2020)

Human Cytomegalovirus RNA2.7 Is Required for Upregulating Multiple Cellular Genes To Promote Cell Motility and Viral Spread Late in Lytic Infection
por: Lau, Betty, et al.
Publicado: (2021)

Identifying high-confidence variants in human cytomegalovirus genomes sequenced from clinical samples
por: Camiolo, Salvatore, et al.
Publicado: (2022)

Whole-Genome Approach to Assessing Human Cytomegalovirus Dynamics in Transplant Patients Undergoing Antiviral Therapy
por: Suárez, Nicolás M., et al.
Publicado: (2020)

Human cytomegalovirus long noncoding RNA4.9 regulates viral DNA replication
por: Tai-Schmiedel, Julie, et al.
Publicado: (2020)

Multiple-Strain Infections of Human Cytomegalovirus With High Genomic Diversity Are Common in Breast Milk From Human Immunodeficiency Virus–Infected Women in Zambia
por: Suárez, Nicolás M, et al.
Publicado: (2019)

Human cytomegalovirus multiple-strain infections and viral population diversity in haematopoietic stem cell transplant recipients analysed by high-throughput sequencing
por: Dhingra, A., et al.
Publicado: (2021)

Complexity of Human Cytomegalovirus Infection in South African HIV-Exposed Infants with Pneumonia
por: Govender, Kerusha, et al.
Publicado: (2022)

Assessment of Viral Targeted Sequence Capture Using Nanopore Sequencing Directly from Clinical Samples
por: Schuele, Leonard, et al.
Publicado: (2020)

Human Cytomegalovirus Genomes Sequenced Directly From Clinical Material: Variation, Multiple-Strain Infection, Recombination, and Gene Loss
por: Suárez, Nicolás M, et al.
Publicado: (2019)

Genome sequences of human cytomegalovirus strain TB40/E variants propagated in fibroblasts and epithelial cells
por: Al Qaffas, Ahmed, et al.
Publicado: (2021)

DisCVR: Rapid viral diagnosis from high-throughput sequencing data
por: Maabar, Maha, et al.
Publicado: (2019)

A framework for real-time monitoring, analysis and adaptive sampling of viral amplicon nanopore sequencing
por: Munro, Rory, et al.
Publicado: (2023)

Analyzing viral epitranscriptomes using nanopore direct RNA sequencing
por: Hong, Ari, et al.
Publicado: (2022)

Human Cytomegalovirus Genome Diversity in Longitudinally Collected Breast Milk Samples
por: Götting, Jasper, et al.
Publicado: (2021)

Genome Sequence of Human Cytomegalovirus Ig-KG-H2, a Variant of Strain KG Propagated in the Presence of Neutralizing Antibodies
por: Al Qaffas, Ahmed, et al.
Publicado: (2020)

Clinical utility of bronchoalveolar lavage cytomegalovirus viral loads in the diagnosis of cytomegalovirus pneumonitis in infants
por: Govender, Kerusha, et al.
Publicado: (2016)

LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data
por: Al Qaffas, Ahmed, et al.
Publicado: (2021)

Cytomegalovirus: Why Viral Dynamics Matter
por: Mueller, Nicolas J.
Publicado: (2015)

Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples
por: Lewandowski, Kuiama, et al.
Publicado: (2019)

Direct oligonucleotide sequencing with nanopores
por: Chalapati, Sachin, et al.
Publicado: (2021)

Dynamic, adaptive sampling during nanopore sequencing using Bayesian experimental design
por: Weilguny, Lukas, et al.
Publicado: (2023)

Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen
por: Depledge, Daniel P., et al.
Publicado: (2019)

Human cytomegalovirus glycoprotein polymorphisms and increasing viral load in AIDS patients
por: Jiang, Xiao-Jing, et al.
Publicado: (2017)

Standard ganciclovir dosing results in slow decline of cytomegalovirus viral loads
por: Märtson, Anne-Grete, et al.
Publicado: (2021)

Diagnostic stewardship to limit repeat plasma cytomegalovirus viral load testing
por: Trirattanapikul, Akeatit, et al.
Publicado: (2023)

Direct Evidence for Viral Antigen Presentation during Latent Cytomegalovirus Infection
por: Lemmermann, Niels A. W., et al.
Publicado: (2021)

The development of a multiplex real-time RT-PCR for the detection of adenovirus, astrovirus, rotavirus and sapovirus from stool samples
por: Bennett, Susan, et al.
Publicado: (2017)

Correlation of cytomegalovirus viral load between whole blood and plasma of congenital cytomegalovirus infection under valganciclovir treatment
por: Torii, Yuka, et al.
Publicado: (2023)

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
por: Greninger, Alexander L., et al.
Publicado: (2015)

Whole-Genome Sequencing of Human Enteroviruses from Clinical Samples by Nanopore Direct RNA Sequencing
por: Grädel, Carole, et al.
Publicado: (2020)

High throughput nanopore sequencing of SARS-CoV-2 viral genomes from patient samples
por: Pater, Adrian A., et al.
Publicado: (2021)

Human Cytomegalovirus Long Non-coding RNA1.2 Suppresses Extracellular Release of the Pro-inflammatory Cytokine IL-6 by Blocking NF-κB Activation
por: Lau, Betty, et al.
Publicado: (2020)

Optimizing DNA Extraction Methods for Nanopore Sequencing of Neisseria gonorrhoeae Directly from Urine Samples
por: Street, Teresa L., et al.
Publicado: (2020)

Monoclonal antibodies targeting nonstructural viral antigens can activate ADCC against human cytomegalovirus
por: Vlahava, Virginia-Maria, et al.
Publicado: (2021)

Association Between Single Nucleotide Polymorphisms and Viral Load in Congenital Cytomegalovirus Infection
por: Jedlińska-Pijanowska, Dominika, et al.
Publicado: (2021)

171. Diagnostic stewardship to limit repeat plasma cytomegalovirus viral load testing
por: Trirattanapikul, Akeatit, et al.
Publicado: (2022)

Impact of belatacept and tacrolimus on cytomegalovirus viral load control and relapse in moderate and high‐risk cytomegalovirus serostatus kidney transplant recipients
por: Magua, Wairimu, et al.
Publicado: (2022)

Rescuing Low Frequency Variants within Intra-Host Viral Populations directly from Oxford Nanopore sequencing data
por: Liu, Yunxi, et al.
Publicado: (2021)

Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data
por: Liu, Yunxi, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_fpmoq42o6dn8g23g7rsao4gmo9