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Multilingual RECIST classification of radiology reports using supervised learning
OBJECTIVES: The objective of this study is the exploration of Artificial Intelligence and Natural Language Processing techniques to support the automatic assignment of the four Response Evaluation Criteria in Solid Tumors (RECIST) scales based on radiology reports. We also aim at evaluating how lang...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10303934/ https://www.ncbi.nlm.nih.gov/pubmed/37388252 http://dx.doi.org/10.3389/fdgth.2023.1195017 |
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author | Mottin, Luc Goldman, Jean-Philippe Jäggli, Christoph Achermann, Rita Gobeill, Julien Knafou, Julien Ehrsam, Julien Wicky, Alexandre Gérard, Camille L. Schwenk, Tanja Charrier, Mélinda Tsantoulis, Petros Lovis, Christian Leichtle, Alexander Kiessling, Michael K. Michielin, Olivier Pradervand, Sylvain Foufi, Vasiliki Ruch, Patrick |
author_facet | Mottin, Luc Goldman, Jean-Philippe Jäggli, Christoph Achermann, Rita Gobeill, Julien Knafou, Julien Ehrsam, Julien Wicky, Alexandre Gérard, Camille L. Schwenk, Tanja Charrier, Mélinda Tsantoulis, Petros Lovis, Christian Leichtle, Alexander Kiessling, Michael K. Michielin, Olivier Pradervand, Sylvain Foufi, Vasiliki Ruch, Patrick |
author_sort | Mottin, Luc |
collection | PubMed |
description | OBJECTIVES: The objective of this study is the exploration of Artificial Intelligence and Natural Language Processing techniques to support the automatic assignment of the four Response Evaluation Criteria in Solid Tumors (RECIST) scales based on radiology reports. We also aim at evaluating how languages and institutional specificities of Swiss teaching hospitals are likely to affect the quality of the classification in French and German languages. METHODS: In our approach, 7 machine learning methods were evaluated to establish a strong baseline. Then, robust models were built, fine-tuned according to the language (French and German), and compared with the expert annotation. RESULTS: The best strategies yield average F1-scores of 90% and 86% respectively for the 2-classes (Progressive/Non-progressive) and the 4-classes (Progressive Disease, Stable Disease, Partial Response, Complete Response) RECIST classification tasks. CONCLUSIONS: These results are competitive with the manual labeling as measured by Matthew's correlation coefficient and Cohen's Kappa (79% and 76%). On this basis, we confirm the capacity of specific models to generalize on new unseen data and we assess the impact of using Pre-trained Language Models (PLMs) on the accuracy of the classifiers. |
format | Online Article Text |
id | pubmed-10303934 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103039342023-06-29 Multilingual RECIST classification of radiology reports using supervised learning Mottin, Luc Goldman, Jean-Philippe Jäggli, Christoph Achermann, Rita Gobeill, Julien Knafou, Julien Ehrsam, Julien Wicky, Alexandre Gérard, Camille L. Schwenk, Tanja Charrier, Mélinda Tsantoulis, Petros Lovis, Christian Leichtle, Alexander Kiessling, Michael K. Michielin, Olivier Pradervand, Sylvain Foufi, Vasiliki Ruch, Patrick Front Digit Health Digital Health OBJECTIVES: The objective of this study is the exploration of Artificial Intelligence and Natural Language Processing techniques to support the automatic assignment of the four Response Evaluation Criteria in Solid Tumors (RECIST) scales based on radiology reports. We also aim at evaluating how languages and institutional specificities of Swiss teaching hospitals are likely to affect the quality of the classification in French and German languages. METHODS: In our approach, 7 machine learning methods were evaluated to establish a strong baseline. Then, robust models were built, fine-tuned according to the language (French and German), and compared with the expert annotation. RESULTS: The best strategies yield average F1-scores of 90% and 86% respectively for the 2-classes (Progressive/Non-progressive) and the 4-classes (Progressive Disease, Stable Disease, Partial Response, Complete Response) RECIST classification tasks. CONCLUSIONS: These results are competitive with the manual labeling as measured by Matthew's correlation coefficient and Cohen's Kappa (79% and 76%). On this basis, we confirm the capacity of specific models to generalize on new unseen data and we assess the impact of using Pre-trained Language Models (PLMs) on the accuracy of the classifiers. Frontiers Media S.A. 2023-06-14 /pmc/articles/PMC10303934/ /pubmed/37388252 http://dx.doi.org/10.3389/fdgth.2023.1195017 Text en © 2023 Mottin, Goldman, Jäggli, Achermann, Gobeill, Knafou, Ehrsam, Wicky, Gérard, Schwenk, Charrier, Tsantoulis, Lovis, Leichtle, Kiessling, Michielin, Pradervand, Foufi and Ruch. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Digital Health Mottin, Luc Goldman, Jean-Philippe Jäggli, Christoph Achermann, Rita Gobeill, Julien Knafou, Julien Ehrsam, Julien Wicky, Alexandre Gérard, Camille L. Schwenk, Tanja Charrier, Mélinda Tsantoulis, Petros Lovis, Christian Leichtle, Alexander Kiessling, Michael K. Michielin, Olivier Pradervand, Sylvain Foufi, Vasiliki Ruch, Patrick Multilingual RECIST classification of radiology reports using supervised learning |
title | Multilingual RECIST classification of radiology reports using supervised learning |
title_full | Multilingual RECIST classification of radiology reports using supervised learning |
title_fullStr | Multilingual RECIST classification of radiology reports using supervised learning |
title_full_unstemmed | Multilingual RECIST classification of radiology reports using supervised learning |
title_short | Multilingual RECIST classification of radiology reports using supervised learning |
title_sort | multilingual recist classification of radiology reports using supervised learning |
topic | Digital Health |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10303934/ https://www.ncbi.nlm.nih.gov/pubmed/37388252 http://dx.doi.org/10.3389/fdgth.2023.1195017 |
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