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Monkeypox detection using deep neural networks

BACKGROUND: In May 2022, the World Health Organization (WHO) European Region announced an atypical Monkeypox epidemic in response to reports of numerous cases in some member countries unrelated to those where the illness is endemic. This issue has raised concerns about the widespread nature of this...

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Autores principales: Sorayaie Azar, Amir, Naemi, Amin, Babaei Rikan, Samin, Bagherzadeh Mohasefi, Jamshid, Pirnejad, Habibollah, Wiil, Uffe Kock
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10304329/
https://www.ncbi.nlm.nih.gov/pubmed/37370031
http://dx.doi.org/10.1186/s12879-023-08408-4
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author Sorayaie Azar, Amir
Naemi, Amin
Babaei Rikan, Samin
Bagherzadeh Mohasefi, Jamshid
Pirnejad, Habibollah
Wiil, Uffe Kock
author_facet Sorayaie Azar, Amir
Naemi, Amin
Babaei Rikan, Samin
Bagherzadeh Mohasefi, Jamshid
Pirnejad, Habibollah
Wiil, Uffe Kock
author_sort Sorayaie Azar, Amir
collection PubMed
description BACKGROUND: In May 2022, the World Health Organization (WHO) European Region announced an atypical Monkeypox epidemic in response to reports of numerous cases in some member countries unrelated to those where the illness is endemic. This issue has raised concerns about the widespread nature of this disease around the world. The experience with Coronavirus Disease 2019 (COVID-19) has increased awareness about pandemics among researchers and health authorities. METHODS: Deep Neural Networks (DNNs) have shown promising performance in detecting COVID-19 and predicting its outcomes. As a result, researchers have begun applying similar methods to detect Monkeypox disease. In this study, we utilize a dataset comprising skin images of three diseases: Monkeypox, Chickenpox, Measles, and Normal cases. We develop seven DNN models to identify Monkeypox from these images. Two scenarios of including two classes and four classes are implemented. RESULTS: The results show that our proposed DenseNet201-based architecture has the best performance, with Accuracy = 97.63%, F1-Score = 90.51%, and Area Under Curve (AUC) = 94.27% in two-class scenario; and Accuracy = 95.18%, F1-Score = 89.61%, AUC = 92.06% for four-class scenario. Comparing our study with previous studies with similar scenarios, shows that our proposed model demonstrates superior performance, particularly in terms of the F1-Score metric. For the sake of transparency and explainability, Local Interpretable Model-Agnostic Explanations (LIME) and Gradient-weighted Class Activation Mapping (Grad-Cam) were developed to interpret the results. These techniques aim to provide insights into the decision-making process, thereby increasing the trust of clinicians. CONCLUSION: The DenseNet201 model outperforms the other models in terms of the confusion metrics, regardless of the scenario. One significant accomplishment of this study is the utilization of LIME and Grad-Cam to identify the affected areas and assess their significance in diagnosing diseases based on skin images. By incorporating these techniques, we enhance our understanding of the infected regions and their relevance in distinguishing Monkeypox from other similar diseases. Our proposed model can serve as a valuable auxiliary tool for diagnosing Monkeypox and distinguishing it from other related conditions.
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spelling pubmed-103043292023-06-29 Monkeypox detection using deep neural networks Sorayaie Azar, Amir Naemi, Amin Babaei Rikan, Samin Bagherzadeh Mohasefi, Jamshid Pirnejad, Habibollah Wiil, Uffe Kock BMC Infect Dis Research BACKGROUND: In May 2022, the World Health Organization (WHO) European Region announced an atypical Monkeypox epidemic in response to reports of numerous cases in some member countries unrelated to those where the illness is endemic. This issue has raised concerns about the widespread nature of this disease around the world. The experience with Coronavirus Disease 2019 (COVID-19) has increased awareness about pandemics among researchers and health authorities. METHODS: Deep Neural Networks (DNNs) have shown promising performance in detecting COVID-19 and predicting its outcomes. As a result, researchers have begun applying similar methods to detect Monkeypox disease. In this study, we utilize a dataset comprising skin images of three diseases: Monkeypox, Chickenpox, Measles, and Normal cases. We develop seven DNN models to identify Monkeypox from these images. Two scenarios of including two classes and four classes are implemented. RESULTS: The results show that our proposed DenseNet201-based architecture has the best performance, with Accuracy = 97.63%, F1-Score = 90.51%, and Area Under Curve (AUC) = 94.27% in two-class scenario; and Accuracy = 95.18%, F1-Score = 89.61%, AUC = 92.06% for four-class scenario. Comparing our study with previous studies with similar scenarios, shows that our proposed model demonstrates superior performance, particularly in terms of the F1-Score metric. For the sake of transparency and explainability, Local Interpretable Model-Agnostic Explanations (LIME) and Gradient-weighted Class Activation Mapping (Grad-Cam) were developed to interpret the results. These techniques aim to provide insights into the decision-making process, thereby increasing the trust of clinicians. CONCLUSION: The DenseNet201 model outperforms the other models in terms of the confusion metrics, regardless of the scenario. One significant accomplishment of this study is the utilization of LIME and Grad-Cam to identify the affected areas and assess their significance in diagnosing diseases based on skin images. By incorporating these techniques, we enhance our understanding of the infected regions and their relevance in distinguishing Monkeypox from other similar diseases. Our proposed model can serve as a valuable auxiliary tool for diagnosing Monkeypox and distinguishing it from other related conditions. BioMed Central 2023-06-27 /pmc/articles/PMC10304329/ /pubmed/37370031 http://dx.doi.org/10.1186/s12879-023-08408-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Sorayaie Azar, Amir
Naemi, Amin
Babaei Rikan, Samin
Bagherzadeh Mohasefi, Jamshid
Pirnejad, Habibollah
Wiil, Uffe Kock
Monkeypox detection using deep neural networks
title Monkeypox detection using deep neural networks
title_full Monkeypox detection using deep neural networks
title_fullStr Monkeypox detection using deep neural networks
title_full_unstemmed Monkeypox detection using deep neural networks
title_short Monkeypox detection using deep neural networks
title_sort monkeypox detection using deep neural networks
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10304329/
https://www.ncbi.nlm.nih.gov/pubmed/37370031
http://dx.doi.org/10.1186/s12879-023-08408-4
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