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Bioinformatics Analysis of WRKY Family Genes in Flax (Linum usitatissimum)
WRKY gene family is one of the largest transcription factor families involved in various physiological processes of plants. Flax (Linum usitatissimum) is an important stem fiber crop, and it is also an economically important crop in natural fiber and textile industries around the world. In this stud...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10304767/ https://www.ncbi.nlm.nih.gov/pubmed/37374041 http://dx.doi.org/10.3390/life13061258 |
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author | An, Xia Liu, Qin Jiang, Hui Dong, Guoyun Tian, Danqing Luo, Xiahong Chen, Changli Li, Wenlue Liu, Tingting Zou, Lina Ying, Jinyao Zhou, Huaping Zhu, Xuan Chen, Xiaoyan |
author_facet | An, Xia Liu, Qin Jiang, Hui Dong, Guoyun Tian, Danqing Luo, Xiahong Chen, Changli Li, Wenlue Liu, Tingting Zou, Lina Ying, Jinyao Zhou, Huaping Zhu, Xuan Chen, Xiaoyan |
author_sort | An, Xia |
collection | PubMed |
description | WRKY gene family is one of the largest transcription factor families involved in various physiological processes of plants. Flax (Linum usitatissimum) is an important stem fiber crop, and it is also an economically important crop in natural fiber and textile industries around the world. In this study, 105 WRKY genes were obtained by screening the whole genome of flax. There were 26 in group I, 68 in group II, 8 in group III and 3 in group UN. The characteristics of the WRKY motif and gene structure in each group are similar. The promoter sequence of WRKY genes includes photoresponsive elements, core regulatory elements and 12 cis-acting elements under abiotic stress. Similar to A. thaliana and Compositae plants, WRKY genes are evenly distributed on each chromosome, with segmental and tandem repeated events, which play a major role in the evolution of WRKY genes. The flax WRKY gene family is mainly concentrated in group I and group II. This study is mainly based on genome-wide information to classify and analyze the flax WRKY gene family, laying a foundation for further understanding the role of WRKY transcription factors in species evolution and functional analysis. |
format | Online Article Text |
id | pubmed-10304767 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-103047672023-06-29 Bioinformatics Analysis of WRKY Family Genes in Flax (Linum usitatissimum) An, Xia Liu, Qin Jiang, Hui Dong, Guoyun Tian, Danqing Luo, Xiahong Chen, Changli Li, Wenlue Liu, Tingting Zou, Lina Ying, Jinyao Zhou, Huaping Zhu, Xuan Chen, Xiaoyan Life (Basel) Article WRKY gene family is one of the largest transcription factor families involved in various physiological processes of plants. Flax (Linum usitatissimum) is an important stem fiber crop, and it is also an economically important crop in natural fiber and textile industries around the world. In this study, 105 WRKY genes were obtained by screening the whole genome of flax. There were 26 in group I, 68 in group II, 8 in group III and 3 in group UN. The characteristics of the WRKY motif and gene structure in each group are similar. The promoter sequence of WRKY genes includes photoresponsive elements, core regulatory elements and 12 cis-acting elements under abiotic stress. Similar to A. thaliana and Compositae plants, WRKY genes are evenly distributed on each chromosome, with segmental and tandem repeated events, which play a major role in the evolution of WRKY genes. The flax WRKY gene family is mainly concentrated in group I and group II. This study is mainly based on genome-wide information to classify and analyze the flax WRKY gene family, laying a foundation for further understanding the role of WRKY transcription factors in species evolution and functional analysis. MDPI 2023-05-25 /pmc/articles/PMC10304767/ /pubmed/37374041 http://dx.doi.org/10.3390/life13061258 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article An, Xia Liu, Qin Jiang, Hui Dong, Guoyun Tian, Danqing Luo, Xiahong Chen, Changli Li, Wenlue Liu, Tingting Zou, Lina Ying, Jinyao Zhou, Huaping Zhu, Xuan Chen, Xiaoyan Bioinformatics Analysis of WRKY Family Genes in Flax (Linum usitatissimum) |
title | Bioinformatics Analysis of WRKY Family Genes in Flax (Linum usitatissimum) |
title_full | Bioinformatics Analysis of WRKY Family Genes in Flax (Linum usitatissimum) |
title_fullStr | Bioinformatics Analysis of WRKY Family Genes in Flax (Linum usitatissimum) |
title_full_unstemmed | Bioinformatics Analysis of WRKY Family Genes in Flax (Linum usitatissimum) |
title_short | Bioinformatics Analysis of WRKY Family Genes in Flax (Linum usitatissimum) |
title_sort | bioinformatics analysis of wrky family genes in flax (linum usitatissimum) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10304767/ https://www.ncbi.nlm.nih.gov/pubmed/37374041 http://dx.doi.org/10.3390/life13061258 |
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