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Machine-Learning-Based Radiomics for Classifying Glioma Grade from Magnetic Resonance Images of the Brain

Grading of gliomas is a piece of critical information related to prognosis and survival. Classifying glioma grade by semantic radiological features is subjective, requires multiple MRI sequences, is quite complex and clinically demanding, and can very often result in erroneous radiological diagnosis...

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Autores principales: Kumar, Anuj, Jha, Ashish Kumar, Agarwal, Jai Prakash, Yadav, Manender, Badhe, Suvarna, Sahay, Ayushi, Epari, Sridhar, Sahu, Arpita, Bhattacharya, Kajari, Chatterjee, Abhishek, Ganeshan, Balaji, Rangarajan, Venkatesh, Moyiadi, Aliasgar, Gupta, Tejpal, Goda, Jayant S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10305272/
https://www.ncbi.nlm.nih.gov/pubmed/37373909
http://dx.doi.org/10.3390/jpm13060920
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author Kumar, Anuj
Jha, Ashish Kumar
Agarwal, Jai Prakash
Yadav, Manender
Badhe, Suvarna
Sahay, Ayushi
Epari, Sridhar
Sahu, Arpita
Bhattacharya, Kajari
Chatterjee, Abhishek
Ganeshan, Balaji
Rangarajan, Venkatesh
Moyiadi, Aliasgar
Gupta, Tejpal
Goda, Jayant S.
author_facet Kumar, Anuj
Jha, Ashish Kumar
Agarwal, Jai Prakash
Yadav, Manender
Badhe, Suvarna
Sahay, Ayushi
Epari, Sridhar
Sahu, Arpita
Bhattacharya, Kajari
Chatterjee, Abhishek
Ganeshan, Balaji
Rangarajan, Venkatesh
Moyiadi, Aliasgar
Gupta, Tejpal
Goda, Jayant S.
author_sort Kumar, Anuj
collection PubMed
description Grading of gliomas is a piece of critical information related to prognosis and survival. Classifying glioma grade by semantic radiological features is subjective, requires multiple MRI sequences, is quite complex and clinically demanding, and can very often result in erroneous radiological diagnosis. We used a radiomics approach with machine learning classifiers to determine the grade of gliomas. Eighty-three patients with histopathologically proven gliomas underwent MRI of the brain. Whenever available, immunohistochemistry was additionally used to augment the histopathological diagnosis. Segmentation was performed manually on the T2W MR sequence using the TexRad texture analysis softwareTM, Version 3.10. Forty-two radiomics features, which included first-order features and shape features, were derived and compared between high-grade and low-grade gliomas. Features were selected by recursive feature elimination using a random forest algorithm method. The classification performance of the models was measured using accuracy, precision, recall, f1 score, and area under the curve (AUC) of the receiver operating characteristic curve. A 10-fold cross-validation was adopted to separate the training and the test data. The selected features were used to build five classifier models: support vector machine, random forest, gradient boost, naive Bayes, and AdaBoost classifiers. The random forest model performed the best, achieving an AUC of 0.81, an accuracy of 0.83, f1 score of 0.88, a recall of 0.93, and a precision of 0.85 for the test cohort. The results suggest that machine-learning-based radiomics features extracted from multiparametric MRI images can provide a non-invasive method for predicting glioma grades preoperatively. In the present study, we extracted the radiomics features from a single cross-sectional image of the T2W MRI sequence and utilized these features to build a fairly robust model to classify low-grade gliomas from high-grade gliomas (grade 4 gliomas).
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spelling pubmed-103052722023-06-29 Machine-Learning-Based Radiomics for Classifying Glioma Grade from Magnetic Resonance Images of the Brain Kumar, Anuj Jha, Ashish Kumar Agarwal, Jai Prakash Yadav, Manender Badhe, Suvarna Sahay, Ayushi Epari, Sridhar Sahu, Arpita Bhattacharya, Kajari Chatterjee, Abhishek Ganeshan, Balaji Rangarajan, Venkatesh Moyiadi, Aliasgar Gupta, Tejpal Goda, Jayant S. J Pers Med Article Grading of gliomas is a piece of critical information related to prognosis and survival. Classifying glioma grade by semantic radiological features is subjective, requires multiple MRI sequences, is quite complex and clinically demanding, and can very often result in erroneous radiological diagnosis. We used a radiomics approach with machine learning classifiers to determine the grade of gliomas. Eighty-three patients with histopathologically proven gliomas underwent MRI of the brain. Whenever available, immunohistochemistry was additionally used to augment the histopathological diagnosis. Segmentation was performed manually on the T2W MR sequence using the TexRad texture analysis softwareTM, Version 3.10. Forty-two radiomics features, which included first-order features and shape features, were derived and compared between high-grade and low-grade gliomas. Features were selected by recursive feature elimination using a random forest algorithm method. The classification performance of the models was measured using accuracy, precision, recall, f1 score, and area under the curve (AUC) of the receiver operating characteristic curve. A 10-fold cross-validation was adopted to separate the training and the test data. The selected features were used to build five classifier models: support vector machine, random forest, gradient boost, naive Bayes, and AdaBoost classifiers. The random forest model performed the best, achieving an AUC of 0.81, an accuracy of 0.83, f1 score of 0.88, a recall of 0.93, and a precision of 0.85 for the test cohort. The results suggest that machine-learning-based radiomics features extracted from multiparametric MRI images can provide a non-invasive method for predicting glioma grades preoperatively. In the present study, we extracted the radiomics features from a single cross-sectional image of the T2W MRI sequence and utilized these features to build a fairly robust model to classify low-grade gliomas from high-grade gliomas (grade 4 gliomas). MDPI 2023-05-30 /pmc/articles/PMC10305272/ /pubmed/37373909 http://dx.doi.org/10.3390/jpm13060920 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kumar, Anuj
Jha, Ashish Kumar
Agarwal, Jai Prakash
Yadav, Manender
Badhe, Suvarna
Sahay, Ayushi
Epari, Sridhar
Sahu, Arpita
Bhattacharya, Kajari
Chatterjee, Abhishek
Ganeshan, Balaji
Rangarajan, Venkatesh
Moyiadi, Aliasgar
Gupta, Tejpal
Goda, Jayant S.
Machine-Learning-Based Radiomics for Classifying Glioma Grade from Magnetic Resonance Images of the Brain
title Machine-Learning-Based Radiomics for Classifying Glioma Grade from Magnetic Resonance Images of the Brain
title_full Machine-Learning-Based Radiomics for Classifying Glioma Grade from Magnetic Resonance Images of the Brain
title_fullStr Machine-Learning-Based Radiomics for Classifying Glioma Grade from Magnetic Resonance Images of the Brain
title_full_unstemmed Machine-Learning-Based Radiomics for Classifying Glioma Grade from Magnetic Resonance Images of the Brain
title_short Machine-Learning-Based Radiomics for Classifying Glioma Grade from Magnetic Resonance Images of the Brain
title_sort machine-learning-based radiomics for classifying glioma grade from magnetic resonance images of the brain
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10305272/
https://www.ncbi.nlm.nih.gov/pubmed/37373909
http://dx.doi.org/10.3390/jpm13060920
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