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The Genome of Varunaivibrio sulfuroxidans Strain TC8(T), a Metabolically Versatile Alphaproteobacterium from the Tor Caldara Gas Vents in the Tyrrhenian Sea
Varunaivibrio sulfuroxidans type strain TC8(T) is a mesophilic, facultatively anaerobic, facultatively chemolithoautotrophic alphaproteobacterium isolated from a sulfidic shallow-water marine gas vent located at Tor Caldara, Tyrrhenian Sea, Italy. V. sulfuroxidans belongs to the family Thalassospira...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10305379/ https://www.ncbi.nlm.nih.gov/pubmed/37374867 http://dx.doi.org/10.3390/microorganisms11061366 |
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author | Patwardhan, Sushmita Phan, Jonathan Smedile, Francesco Vetriani, Costantino |
author_facet | Patwardhan, Sushmita Phan, Jonathan Smedile, Francesco Vetriani, Costantino |
author_sort | Patwardhan, Sushmita |
collection | PubMed |
description | Varunaivibrio sulfuroxidans type strain TC8(T) is a mesophilic, facultatively anaerobic, facultatively chemolithoautotrophic alphaproteobacterium isolated from a sulfidic shallow-water marine gas vent located at Tor Caldara, Tyrrhenian Sea, Italy. V. sulfuroxidans belongs to the family Thalassospiraceae within the Alphaproteobacteria, with Magnetovibrio blakemorei as its closest relative. The genome of V. sulfuroxidans encodes the genes involved in sulfur, thiosulfate and sulfide oxidation, as well as nitrate and oxygen respiration. The genome encodes the genes involved in carbon fixation via the Calvin–Benson–Bassham cycle, in addition to genes involved in glycolysis and the TCA cycle, indicating a mixotrophic lifestyle. Genes involved in the detoxification of mercury and arsenate are also present. The genome also encodes a complete flagellar complex, one intact prophage and one CRISPR, as well as a putative DNA uptake mechanism mediated by the type IVc (aka Tad pilus) secretion system. Overall, the genome of Varunaivibrio sulfuroxidans highlights the organism’s metabolic versatility, a characteristic that makes this strain well-adapted to the dynamic environmental conditions of sulfidic gas vents. |
format | Online Article Text |
id | pubmed-10305379 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-103053792023-06-29 The Genome of Varunaivibrio sulfuroxidans Strain TC8(T), a Metabolically Versatile Alphaproteobacterium from the Tor Caldara Gas Vents in the Tyrrhenian Sea Patwardhan, Sushmita Phan, Jonathan Smedile, Francesco Vetriani, Costantino Microorganisms Article Varunaivibrio sulfuroxidans type strain TC8(T) is a mesophilic, facultatively anaerobic, facultatively chemolithoautotrophic alphaproteobacterium isolated from a sulfidic shallow-water marine gas vent located at Tor Caldara, Tyrrhenian Sea, Italy. V. sulfuroxidans belongs to the family Thalassospiraceae within the Alphaproteobacteria, with Magnetovibrio blakemorei as its closest relative. The genome of V. sulfuroxidans encodes the genes involved in sulfur, thiosulfate and sulfide oxidation, as well as nitrate and oxygen respiration. The genome encodes the genes involved in carbon fixation via the Calvin–Benson–Bassham cycle, in addition to genes involved in glycolysis and the TCA cycle, indicating a mixotrophic lifestyle. Genes involved in the detoxification of mercury and arsenate are also present. The genome also encodes a complete flagellar complex, one intact prophage and one CRISPR, as well as a putative DNA uptake mechanism mediated by the type IVc (aka Tad pilus) secretion system. Overall, the genome of Varunaivibrio sulfuroxidans highlights the organism’s metabolic versatility, a characteristic that makes this strain well-adapted to the dynamic environmental conditions of sulfidic gas vents. MDPI 2023-05-23 /pmc/articles/PMC10305379/ /pubmed/37374867 http://dx.doi.org/10.3390/microorganisms11061366 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Patwardhan, Sushmita Phan, Jonathan Smedile, Francesco Vetriani, Costantino The Genome of Varunaivibrio sulfuroxidans Strain TC8(T), a Metabolically Versatile Alphaproteobacterium from the Tor Caldara Gas Vents in the Tyrrhenian Sea |
title | The Genome of Varunaivibrio sulfuroxidans Strain TC8(T), a Metabolically Versatile Alphaproteobacterium from the Tor Caldara Gas Vents in the Tyrrhenian Sea |
title_full | The Genome of Varunaivibrio sulfuroxidans Strain TC8(T), a Metabolically Versatile Alphaproteobacterium from the Tor Caldara Gas Vents in the Tyrrhenian Sea |
title_fullStr | The Genome of Varunaivibrio sulfuroxidans Strain TC8(T), a Metabolically Versatile Alphaproteobacterium from the Tor Caldara Gas Vents in the Tyrrhenian Sea |
title_full_unstemmed | The Genome of Varunaivibrio sulfuroxidans Strain TC8(T), a Metabolically Versatile Alphaproteobacterium from the Tor Caldara Gas Vents in the Tyrrhenian Sea |
title_short | The Genome of Varunaivibrio sulfuroxidans Strain TC8(T), a Metabolically Versatile Alphaproteobacterium from the Tor Caldara Gas Vents in the Tyrrhenian Sea |
title_sort | genome of varunaivibrio sulfuroxidans strain tc8(t), a metabolically versatile alphaproteobacterium from the tor caldara gas vents in the tyrrhenian sea |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10305379/ https://www.ncbi.nlm.nih.gov/pubmed/37374867 http://dx.doi.org/10.3390/microorganisms11061366 |
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