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Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM

Understanding how structure and function meet to drive biological processes is progressively shifting the cryoEM field towards a more advanced analysis of macromolecular flexibility. Thanks to techniques such as single-particle analysis and electron tomography, it is possible to image a macromolecul...

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Autores principales: Herreros, D., Krieger, J. M., Fonseca, Y., Conesa, P., Harastani, M., Vuillemot, R., Hamitouche, I., Serrano Gutiérrez, R., Gragera, M., Melero, R., Jonic, S., Carazo, J. M., Sorzano, C. O. S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10306064/
https://www.ncbi.nlm.nih.gov/pubmed/37326585
http://dx.doi.org/10.1107/S2059798323004497
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author Herreros, D.
Krieger, J. M.
Fonseca, Y.
Conesa, P.
Harastani, M.
Vuillemot, R.
Hamitouche, I.
Serrano Gutiérrez, R.
Gragera, M.
Melero, R.
Jonic, S.
Carazo, J. M.
Sorzano, C. O. S.
author_facet Herreros, D.
Krieger, J. M.
Fonseca, Y.
Conesa, P.
Harastani, M.
Vuillemot, R.
Hamitouche, I.
Serrano Gutiérrez, R.
Gragera, M.
Melero, R.
Jonic, S.
Carazo, J. M.
Sorzano, C. O. S.
author_sort Herreros, D.
collection PubMed
description Understanding how structure and function meet to drive biological processes is progressively shifting the cryoEM field towards a more advanced analysis of macromolecular flexibility. Thanks to techniques such as single-particle analysis and electron tomography, it is possible to image a macromolecule in different states, information that can subsequently be extracted through advanced image-processing methods to build a richer approximation of a conformational landscape. However, the interoperability of all of these algorithms remains a challenging task that is left to users, preventing them from defining a single flexible workflow in which conformational information can be addressed by different algorithms. Therefore, in this work, a new framework integrated into Scipion is proposed called the Flexibility Hub. This framework automatically handles intercommunication between different heterogeneity software, simplifying the task of combining the software into workflows in which the quality and the amount of information extracted from flexibility analysis is maximized.
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spelling pubmed-103060642023-06-29 Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM Herreros, D. Krieger, J. M. Fonseca, Y. Conesa, P. Harastani, M. Vuillemot, R. Hamitouche, I. Serrano Gutiérrez, R. Gragera, M. Melero, R. Jonic, S. Carazo, J. M. Sorzano, C. O. S. Acta Crystallogr D Struct Biol Ccp-EM Understanding how structure and function meet to drive biological processes is progressively shifting the cryoEM field towards a more advanced analysis of macromolecular flexibility. Thanks to techniques such as single-particle analysis and electron tomography, it is possible to image a macromolecule in different states, information that can subsequently be extracted through advanced image-processing methods to build a richer approximation of a conformational landscape. However, the interoperability of all of these algorithms remains a challenging task that is left to users, preventing them from defining a single flexible workflow in which conformational information can be addressed by different algorithms. Therefore, in this work, a new framework integrated into Scipion is proposed called the Flexibility Hub. This framework automatically handles intercommunication between different heterogeneity software, simplifying the task of combining the software into workflows in which the quality and the amount of information extracted from flexibility analysis is maximized. International Union of Crystallography 2023-06-16 /pmc/articles/PMC10306064/ /pubmed/37326585 http://dx.doi.org/10.1107/S2059798323004497 Text en © D. Herreros et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Ccp-EM
Herreros, D.
Krieger, J. M.
Fonseca, Y.
Conesa, P.
Harastani, M.
Vuillemot, R.
Hamitouche, I.
Serrano Gutiérrez, R.
Gragera, M.
Melero, R.
Jonic, S.
Carazo, J. M.
Sorzano, C. O. S.
Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
title Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
title_full Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
title_fullStr Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
title_full_unstemmed Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
title_short Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM
title_sort scipion flexibility hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoem
topic Ccp-EM
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10306064/
https://www.ncbi.nlm.nih.gov/pubmed/37326585
http://dx.doi.org/10.1107/S2059798323004497
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