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Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data

Time-resolved x-ray liquidography (TRXL) is a potent method for investigating the structural dynamics of chemical and biological reactions in the liquid phase. It has enabled the extraction of detailed structural aspects of various dynamic processes, the molecular structures of intermediates, and ki...

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Detalles Bibliográficos
Autores principales: Ki, H., Gu, J., Cha, Y., Lee, K. W., Ihee, H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Crystallographic Association 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10306411/
https://www.ncbi.nlm.nih.gov/pubmed/37388296
http://dx.doi.org/10.1063/4.0000189
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author Ki, H.
Gu, J.
Cha, Y.
Lee, K. W.
Ihee, H.
author_facet Ki, H.
Gu, J.
Cha, Y.
Lee, K. W.
Ihee, H.
author_sort Ki, H.
collection PubMed
description Time-resolved x-ray liquidography (TRXL) is a potent method for investigating the structural dynamics of chemical and biological reactions in the liquid phase. It has enabled the extraction of detailed structural aspects of various dynamic processes, the molecular structures of intermediates, and kinetics of reactions across a wide range of systems, from small molecules to proteins and nanoparticles. Proper data analysis is key to extracting the information of the kinetics and structural dynamics of the studied system encrypted in the TRXL data. In typical TRXL data, the signals from solute scattering, solvent scattering, and solute–solvent cross scattering are mixed in the q-space, and the solute kinetics and solvent hydrodynamics are mixed in the time domain, thus complicating the data analysis. Various methods developed so far generally require prior knowledge of the molecular structures of candidate species involved in the reaction. Because such information is often unavailable, a typical data analysis often involves tedious trial and error. To remedy this situation, we have developed a method named projection to extract the perpendicular component (PEPC), capable of removing the contribution of solvent kinetics from TRXL data. The resulting data then contain only the solute kinetics, and, thus, the solute kinetics can be easily determined. Once the solute kinetics is determined, the subsequent data analysis to extract the structural information can be performed with drastically improved convenience. The application of the PEPC method is demonstrated with TRXL data from the photochemistry of two molecular systems: [Au(CN)(2)(−)](3) in water and CHI(3) in cyclohexane.
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spelling pubmed-103064112023-06-29 Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data Ki, H. Gu, J. Cha, Y. Lee, K. W. Ihee, H. Struct Dyn ARTICLES Time-resolved x-ray liquidography (TRXL) is a potent method for investigating the structural dynamics of chemical and biological reactions in the liquid phase. It has enabled the extraction of detailed structural aspects of various dynamic processes, the molecular structures of intermediates, and kinetics of reactions across a wide range of systems, from small molecules to proteins and nanoparticles. Proper data analysis is key to extracting the information of the kinetics and structural dynamics of the studied system encrypted in the TRXL data. In typical TRXL data, the signals from solute scattering, solvent scattering, and solute–solvent cross scattering are mixed in the q-space, and the solute kinetics and solvent hydrodynamics are mixed in the time domain, thus complicating the data analysis. Various methods developed so far generally require prior knowledge of the molecular structures of candidate species involved in the reaction. Because such information is often unavailable, a typical data analysis often involves tedious trial and error. To remedy this situation, we have developed a method named projection to extract the perpendicular component (PEPC), capable of removing the contribution of solvent kinetics from TRXL data. The resulting data then contain only the solute kinetics, and, thus, the solute kinetics can be easily determined. Once the solute kinetics is determined, the subsequent data analysis to extract the structural information can be performed with drastically improved convenience. The application of the PEPC method is demonstrated with TRXL data from the photochemistry of two molecular systems: [Au(CN)(2)(−)](3) in water and CHI(3) in cyclohexane. American Crystallographic Association 2023-06-27 /pmc/articles/PMC10306411/ /pubmed/37388296 http://dx.doi.org/10.1063/4.0000189 Text en © 2023 Author(s). https://creativecommons.org/licenses/by/4.0/All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle ARTICLES
Ki, H.
Gu, J.
Cha, Y.
Lee, K. W.
Ihee, H.
Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data
title Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data
title_full Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data
title_fullStr Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data
title_full_unstemmed Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data
title_short Projection to extract the perpendicular component (PEPC) method for extracting kinetics from time-resolved data
title_sort projection to extract the perpendicular component (pepc) method for extracting kinetics from time-resolved data
topic ARTICLES
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10306411/
https://www.ncbi.nlm.nih.gov/pubmed/37388296
http://dx.doi.org/10.1063/4.0000189
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