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Synthetic Tabular Data Evaluation in the Health Domain Covering Resemblance, Utility, and Privacy Dimensions

Background  Synthetic tabular data generation is a potentially valuable technology with great promise for data augmentation and privacy preservation. However, prior to adoption, an empirical assessment of generated synthetic tabular data is required across dimensions relevant to the target applicati...

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Autores principales: Hernadez, Mikel, Epelde, Gorka, Alberdi, Ane, Cilla, Rodrigo, Rankin, Debbie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Georg Thieme Verlag KG 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10306449/
https://www.ncbi.nlm.nih.gov/pubmed/36623830
http://dx.doi.org/10.1055/s-0042-1760247
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author Hernadez, Mikel
Epelde, Gorka
Alberdi, Ane
Cilla, Rodrigo
Rankin, Debbie
author_facet Hernadez, Mikel
Epelde, Gorka
Alberdi, Ane
Cilla, Rodrigo
Rankin, Debbie
author_sort Hernadez, Mikel
collection PubMed
description Background  Synthetic tabular data generation is a potentially valuable technology with great promise for data augmentation and privacy preservation. However, prior to adoption, an empirical assessment of generated synthetic tabular data is required across dimensions relevant to the target application to determine its efficacy. A lack of standardized and objective evaluation and benchmarking strategy for synthetic tabular data in the health domain has been found in the literature. Objective  The aim of this paper is to identify key dimensions, per dimension metrics, and methods for evaluating synthetic tabular data generated with different techniques and configurations for health domain application development and to provide a strategy to orchestrate them. Methods  Based on the literature, the resemblance, utility, and privacy dimensions have been prioritized, and a collection of metrics and methods for their evaluation are orchestrated into a complete evaluation pipeline. This way, a guided and comparative assessment of generated synthetic tabular data can be done, categorizing its quality into three categories (“ Excellent, ” “ Good, ” and “ Poor ”). Six health care-related datasets and four synthetic tabular data generation approaches have been chosen to conduct an analysis and evaluation to verify the utility of the proposed evaluation pipeline. Results  The synthetic tabular data generated with the four selected approaches has maintained resemblance, utility, and privacy for most datasets and synthetic tabular data generation approach combination. In several datasets, some approaches have outperformed others, while in other datasets, more than one approach has yielded the same performance. Conclusion  The results have shown that the proposed pipeline can effectively be used to evaluate and benchmark the synthetic tabular data generated by various synthetic tabular data generation approaches. Therefore, this pipeline can support the scientific community in selecting the most suitable synthetic tabular data generation approaches for their data and application of interest.
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spelling pubmed-103064492023-06-29 Synthetic Tabular Data Evaluation in the Health Domain Covering Resemblance, Utility, and Privacy Dimensions Hernadez, Mikel Epelde, Gorka Alberdi, Ane Cilla, Rodrigo Rankin, Debbie Methods Inf Med Background  Synthetic tabular data generation is a potentially valuable technology with great promise for data augmentation and privacy preservation. However, prior to adoption, an empirical assessment of generated synthetic tabular data is required across dimensions relevant to the target application to determine its efficacy. A lack of standardized and objective evaluation and benchmarking strategy for synthetic tabular data in the health domain has been found in the literature. Objective  The aim of this paper is to identify key dimensions, per dimension metrics, and methods for evaluating synthetic tabular data generated with different techniques and configurations for health domain application development and to provide a strategy to orchestrate them. Methods  Based on the literature, the resemblance, utility, and privacy dimensions have been prioritized, and a collection of metrics and methods for their evaluation are orchestrated into a complete evaluation pipeline. This way, a guided and comparative assessment of generated synthetic tabular data can be done, categorizing its quality into three categories (“ Excellent, ” “ Good, ” and “ Poor ”). Six health care-related datasets and four synthetic tabular data generation approaches have been chosen to conduct an analysis and evaluation to verify the utility of the proposed evaluation pipeline. Results  The synthetic tabular data generated with the four selected approaches has maintained resemblance, utility, and privacy for most datasets and synthetic tabular data generation approach combination. In several datasets, some approaches have outperformed others, while in other datasets, more than one approach has yielded the same performance. Conclusion  The results have shown that the proposed pipeline can effectively be used to evaluate and benchmark the synthetic tabular data generated by various synthetic tabular data generation approaches. Therefore, this pipeline can support the scientific community in selecting the most suitable synthetic tabular data generation approaches for their data and application of interest. Georg Thieme Verlag KG 2023-01-09 /pmc/articles/PMC10306449/ /pubmed/36623830 http://dx.doi.org/10.1055/s-0042-1760247 Text en The Author(s). This is an open access article published by Thieme under the terms of the Creative Commons Attribution-NonDerivative-NonCommercial License, permitting copying and reproduction so long as the original work is given appropriate credit. Contents may not be used for commercial purposes, or adapted, remixed, transformed or built upon. ( https://creativecommons.org/licenses/by-nc-nd/4.0/ ) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License, which permits unrestricted reproduction and distribution, for non-commercial purposes only; and use and reproduction, but not distribution, of adapted material for non-commercial purposes only, provided the original work is properly cited.
spellingShingle Hernadez, Mikel
Epelde, Gorka
Alberdi, Ane
Cilla, Rodrigo
Rankin, Debbie
Synthetic Tabular Data Evaluation in the Health Domain Covering Resemblance, Utility, and Privacy Dimensions
title Synthetic Tabular Data Evaluation in the Health Domain Covering Resemblance, Utility, and Privacy Dimensions
title_full Synthetic Tabular Data Evaluation in the Health Domain Covering Resemblance, Utility, and Privacy Dimensions
title_fullStr Synthetic Tabular Data Evaluation in the Health Domain Covering Resemblance, Utility, and Privacy Dimensions
title_full_unstemmed Synthetic Tabular Data Evaluation in the Health Domain Covering Resemblance, Utility, and Privacy Dimensions
title_short Synthetic Tabular Data Evaluation in the Health Domain Covering Resemblance, Utility, and Privacy Dimensions
title_sort synthetic tabular data evaluation in the health domain covering resemblance, utility, and privacy dimensions
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10306449/
https://www.ncbi.nlm.nih.gov/pubmed/36623830
http://dx.doi.org/10.1055/s-0042-1760247
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