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Increase in power by obtaining 10 or more controls per case when type-1 error is small in large-scale association studies

BACKGROUND: The rule of thumb that there is little gain in statistical power by obtaining more than 4 controls per case, is based on type-1 error α = 0.05. However, association studies that evaluate thousands or millions of associations use smaller α and may have access to plentiful controls. We inv...

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Autores principales: Katki, Hormuzd A., Berndt, Sonja I., Machiela, Mitchell J., Stewart, Douglas R., Garcia-Closas, Montserrat, Kim, Jung, Shi, Jianxin, Yu, Kai, Rothman, Nathaniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10308790/
https://www.ncbi.nlm.nih.gov/pubmed/37386403
http://dx.doi.org/10.1186/s12874-023-01973-x
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author Katki, Hormuzd A.
Berndt, Sonja I.
Machiela, Mitchell J.
Stewart, Douglas R.
Garcia-Closas, Montserrat
Kim, Jung
Shi, Jianxin
Yu, Kai
Rothman, Nathaniel
author_facet Katki, Hormuzd A.
Berndt, Sonja I.
Machiela, Mitchell J.
Stewart, Douglas R.
Garcia-Closas, Montserrat
Kim, Jung
Shi, Jianxin
Yu, Kai
Rothman, Nathaniel
author_sort Katki, Hormuzd A.
collection PubMed
description BACKGROUND: The rule of thumb that there is little gain in statistical power by obtaining more than 4 controls per case, is based on type-1 error α = 0.05. However, association studies that evaluate thousands or millions of associations use smaller α and may have access to plentiful controls. We investigate power gains, and reductions in p-values, when increasing well beyond 4 controls per case, for small α. METHODS: We calculate the power, the median expected p-value, and the minimum detectable odds-ratio (OR), as a function of the number of controls/case, as α decreases. RESULTS: As α decreases, at each ratio of controls per case, the increase in power is larger than for α = 0.05. For α between 10(–6) and 10(–9) (typical for thousands or millions of associations), increasing from 4 controls per case to 10–50 controls per case increases power. For example, a study with power = 0.2 (α = 5 × 10(–8)) with 1 control/case has power = 0.65 with 4 controls/case, but with 10 controls/case has power = 0.78, and with 50 controls/case has power = 0.84. For situations where obtaining more than 4 controls per case provides small increases in power beyond 0.9 (at small α), the expected p-value can decrease by orders-of-magnitude below α. Increasing from 1 to 4 controls/case reduces the minimum detectable OR toward the null by 20.9%, and from 4 to 50 controls/case reduces by an additional 9.7%, a result which applies regardless of α and hence also applies to “regular” α = 0.05 epidemiology. CONCLUSIONS: At small α, versus 4 controls/case, recruiting 10 or more controls/cases can increase power, reduce the expected p-value by 1–2 orders of magnitude, and meaningfully reduce the minimum detectable OR. These benefits of increasing the controls/case ratio increase as the number of cases increases, although the amount of benefit depends on exposure frequencies and true OR. Provided that controls are comparable to cases, our findings suggest greater sharing of comparable controls in large-scale association studies. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-023-01973-x.
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spelling pubmed-103087902023-06-30 Increase in power by obtaining 10 or more controls per case when type-1 error is small in large-scale association studies Katki, Hormuzd A. Berndt, Sonja I. Machiela, Mitchell J. Stewart, Douglas R. Garcia-Closas, Montserrat Kim, Jung Shi, Jianxin Yu, Kai Rothman, Nathaniel BMC Med Res Methodol Research BACKGROUND: The rule of thumb that there is little gain in statistical power by obtaining more than 4 controls per case, is based on type-1 error α = 0.05. However, association studies that evaluate thousands or millions of associations use smaller α and may have access to plentiful controls. We investigate power gains, and reductions in p-values, when increasing well beyond 4 controls per case, for small α. METHODS: We calculate the power, the median expected p-value, and the minimum detectable odds-ratio (OR), as a function of the number of controls/case, as α decreases. RESULTS: As α decreases, at each ratio of controls per case, the increase in power is larger than for α = 0.05. For α between 10(–6) and 10(–9) (typical for thousands or millions of associations), increasing from 4 controls per case to 10–50 controls per case increases power. For example, a study with power = 0.2 (α = 5 × 10(–8)) with 1 control/case has power = 0.65 with 4 controls/case, but with 10 controls/case has power = 0.78, and with 50 controls/case has power = 0.84. For situations where obtaining more than 4 controls per case provides small increases in power beyond 0.9 (at small α), the expected p-value can decrease by orders-of-magnitude below α. Increasing from 1 to 4 controls/case reduces the minimum detectable OR toward the null by 20.9%, and from 4 to 50 controls/case reduces by an additional 9.7%, a result which applies regardless of α and hence also applies to “regular” α = 0.05 epidemiology. CONCLUSIONS: At small α, versus 4 controls/case, recruiting 10 or more controls/cases can increase power, reduce the expected p-value by 1–2 orders of magnitude, and meaningfully reduce the minimum detectable OR. These benefits of increasing the controls/case ratio increase as the number of cases increases, although the amount of benefit depends on exposure frequencies and true OR. Provided that controls are comparable to cases, our findings suggest greater sharing of comparable controls in large-scale association studies. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-023-01973-x. BioMed Central 2023-06-29 /pmc/articles/PMC10308790/ /pubmed/37386403 http://dx.doi.org/10.1186/s12874-023-01973-x Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Katki, Hormuzd A.
Berndt, Sonja I.
Machiela, Mitchell J.
Stewart, Douglas R.
Garcia-Closas, Montserrat
Kim, Jung
Shi, Jianxin
Yu, Kai
Rothman, Nathaniel
Increase in power by obtaining 10 or more controls per case when type-1 error is small in large-scale association studies
title Increase in power by obtaining 10 or more controls per case when type-1 error is small in large-scale association studies
title_full Increase in power by obtaining 10 or more controls per case when type-1 error is small in large-scale association studies
title_fullStr Increase in power by obtaining 10 or more controls per case when type-1 error is small in large-scale association studies
title_full_unstemmed Increase in power by obtaining 10 or more controls per case when type-1 error is small in large-scale association studies
title_short Increase in power by obtaining 10 or more controls per case when type-1 error is small in large-scale association studies
title_sort increase in power by obtaining 10 or more controls per case when type-1 error is small in large-scale association studies
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10308790/
https://www.ncbi.nlm.nih.gov/pubmed/37386403
http://dx.doi.org/10.1186/s12874-023-01973-x
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