Cargando…

Toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning

To acquire statistical regularities from the world, the brain must reliably process, and learn from, spatio-temporally structured information. Although an increasing number of computational models have attempted to explain how such sequence learning may be implemented in the neural hardware, many re...

Descripción completa

Detalles Bibliográficos
Autores principales: Zajzon, Barna, Duarte, Renato, Morrison, Abigail
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10310927/
https://www.ncbi.nlm.nih.gov/pubmed/37396571
http://dx.doi.org/10.3389/fnint.2023.935177
_version_ 1785066636792823808
author Zajzon, Barna
Duarte, Renato
Morrison, Abigail
author_facet Zajzon, Barna
Duarte, Renato
Morrison, Abigail
author_sort Zajzon, Barna
collection PubMed
description To acquire statistical regularities from the world, the brain must reliably process, and learn from, spatio-temporally structured information. Although an increasing number of computational models have attempted to explain how such sequence learning may be implemented in the neural hardware, many remain limited in functionality or lack biophysical plausibility. If we are to harvest the knowledge within these models and arrive at a deeper mechanistic understanding of sequential processing in cortical circuits, it is critical that the models and their findings are accessible, reproducible, and quantitatively comparable. Here we illustrate the importance of these aspects by providing a thorough investigation of a recently proposed sequence learning model. We re-implement the modular columnar architecture and reward-based learning rule in the open-source NEST simulator, and successfully replicate the main findings of the original study. Building on these, we perform an in-depth analysis of the model's robustness to parameter settings and underlying assumptions, highlighting its strengths and weaknesses. We demonstrate a limitation of the model consisting in the hard-wiring of the sequence order in the connectivity patterns, and suggest possible solutions. Finally, we show that the core functionality of the model is retained under more biologically-plausible constraints.
format Online
Article
Text
id pubmed-10310927
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-103109272023-07-01 Toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning Zajzon, Barna Duarte, Renato Morrison, Abigail Front Integr Neurosci Neuroscience To acquire statistical regularities from the world, the brain must reliably process, and learn from, spatio-temporally structured information. Although an increasing number of computational models have attempted to explain how such sequence learning may be implemented in the neural hardware, many remain limited in functionality or lack biophysical plausibility. If we are to harvest the knowledge within these models and arrive at a deeper mechanistic understanding of sequential processing in cortical circuits, it is critical that the models and their findings are accessible, reproducible, and quantitatively comparable. Here we illustrate the importance of these aspects by providing a thorough investigation of a recently proposed sequence learning model. We re-implement the modular columnar architecture and reward-based learning rule in the open-source NEST simulator, and successfully replicate the main findings of the original study. Building on these, we perform an in-depth analysis of the model's robustness to parameter settings and underlying assumptions, highlighting its strengths and weaknesses. We demonstrate a limitation of the model consisting in the hard-wiring of the sequence order in the connectivity patterns, and suggest possible solutions. Finally, we show that the core functionality of the model is retained under more biologically-plausible constraints. Frontiers Media S.A. 2023-06-15 /pmc/articles/PMC10310927/ /pubmed/37396571 http://dx.doi.org/10.3389/fnint.2023.935177 Text en Copyright © 2023 Zajzon, Duarte and Morrison. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Zajzon, Barna
Duarte, Renato
Morrison, Abigail
Toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning
title Toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning
title_full Toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning
title_fullStr Toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning
title_full_unstemmed Toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning
title_short Toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning
title_sort toward reproducible models of sequence learning: replication and analysis of a modular spiking network with reward-based learning
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10310927/
https://www.ncbi.nlm.nih.gov/pubmed/37396571
http://dx.doi.org/10.3389/fnint.2023.935177
work_keys_str_mv AT zajzonbarna towardreproduciblemodelsofsequencelearningreplicationandanalysisofamodularspikingnetworkwithrewardbasedlearning
AT duarterenato towardreproduciblemodelsofsequencelearningreplicationandanalysisofamodularspikingnetworkwithrewardbasedlearning
AT morrisonabigail towardreproduciblemodelsofsequencelearningreplicationandanalysisofamodularspikingnetworkwithrewardbasedlearning