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Hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage I–III lung adenocarcinoma

The high risk of postoperative mortality in lung adenocarcinoma (LUAD) patients is principally driven by cancer recurrence and low response rates to adjuvant treatment. Here, A combined cohort containing 1,026 stage I–III patients was divided into the learning (n = 678) and validation datasets (n = ...

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Autores principales: Zhang, Yongqiang, Yang, Zhao, Tang, Yuqin, Guo, Chengbin, Lin, Danni, Cheng, Linling, Hu, Xun, Zhang, Kang, Li, Gen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Chongqing Medical University 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10311029/
https://www.ncbi.nlm.nih.gov/pubmed/37397559
http://dx.doi.org/10.1016/j.gendis.2022.07.005
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author Zhang, Yongqiang
Yang, Zhao
Tang, Yuqin
Guo, Chengbin
Lin, Danni
Cheng, Linling
Hu, Xun
Zhang, Kang
Li, Gen
author_facet Zhang, Yongqiang
Yang, Zhao
Tang, Yuqin
Guo, Chengbin
Lin, Danni
Cheng, Linling
Hu, Xun
Zhang, Kang
Li, Gen
author_sort Zhang, Yongqiang
collection PubMed
description The high risk of postoperative mortality in lung adenocarcinoma (LUAD) patients is principally driven by cancer recurrence and low response rates to adjuvant treatment. Here, A combined cohort containing 1,026 stage I–III patients was divided into the learning (n = 678) and validation datasets (n = 348). The former was used to establish a 16-mRNA risk signature for recurrence prediction with multiple statistical algorithms, which was verified in the validation set. Univariate and multivariate analyses confirmed it as an independent indicator for both recurrence-free survival (RFS) and overall survival (OS). Distinct molecular characteristics between the two groups including genomic alterations, and hallmark pathways were comprehensively analyzed. Remarkably, the classifier was tightly linked to immune infiltrations, highlighting the critical role of immune surveillance in prolonging survival for LUAD. Moreover, the classifier was a valuable predictor for therapeutic responses in patients, and the low-risk group was more likely to yield clinical benefits from immunotherapy. A transcription factor regulatory protein–protein interaction network (TF-PPI-network) was constructed via weighted gene co-expression network analysis (WGCNA) concerning the hub genes of the signature. The constructed multidimensional nomogram dramatically increased the predictive accuracy. Therefore, our signature provides a forceful basis for individualized LUAD management with promising potential implications.
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spelling pubmed-103110292023-07-01 Hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage I–III lung adenocarcinoma Zhang, Yongqiang Yang, Zhao Tang, Yuqin Guo, Chengbin Lin, Danni Cheng, Linling Hu, Xun Zhang, Kang Li, Gen Genes Dis Full Length Article The high risk of postoperative mortality in lung adenocarcinoma (LUAD) patients is principally driven by cancer recurrence and low response rates to adjuvant treatment. Here, A combined cohort containing 1,026 stage I–III patients was divided into the learning (n = 678) and validation datasets (n = 348). The former was used to establish a 16-mRNA risk signature for recurrence prediction with multiple statistical algorithms, which was verified in the validation set. Univariate and multivariate analyses confirmed it as an independent indicator for both recurrence-free survival (RFS) and overall survival (OS). Distinct molecular characteristics between the two groups including genomic alterations, and hallmark pathways were comprehensively analyzed. Remarkably, the classifier was tightly linked to immune infiltrations, highlighting the critical role of immune surveillance in prolonging survival for LUAD. Moreover, the classifier was a valuable predictor for therapeutic responses in patients, and the low-risk group was more likely to yield clinical benefits from immunotherapy. A transcription factor regulatory protein–protein interaction network (TF-PPI-network) was constructed via weighted gene co-expression network analysis (WGCNA) concerning the hub genes of the signature. The constructed multidimensional nomogram dramatically increased the predictive accuracy. Therefore, our signature provides a forceful basis for individualized LUAD management with promising potential implications. Chongqing Medical University 2022-08-05 /pmc/articles/PMC10311029/ /pubmed/37397559 http://dx.doi.org/10.1016/j.gendis.2022.07.005 Text en © 2022 The Authors. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co., Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Full Length Article
Zhang, Yongqiang
Yang, Zhao
Tang, Yuqin
Guo, Chengbin
Lin, Danni
Cheng, Linling
Hu, Xun
Zhang, Kang
Li, Gen
Hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage I–III lung adenocarcinoma
title Hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage I–III lung adenocarcinoma
title_full Hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage I–III lung adenocarcinoma
title_fullStr Hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage I–III lung adenocarcinoma
title_full_unstemmed Hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage I–III lung adenocarcinoma
title_short Hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage I–III lung adenocarcinoma
title_sort hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage i–iii lung adenocarcinoma
topic Full Length Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10311029/
https://www.ncbi.nlm.nih.gov/pubmed/37397559
http://dx.doi.org/10.1016/j.gendis.2022.07.005
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