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Development and validation of an inflammatory response-related signature in triple negative breast cancer for predicting prognosis and immunotherapy
BACKGROUND: Inflammation is one of the most important characteristics of tumor tissue. Signatures based on inflammatory response-related genes (IRGs) can predict prognosis and treatment response in a variety of tumors. However, the clear function of IRGs in the triple negative breast cancer (TNBC) s...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10311032/ https://www.ncbi.nlm.nih.gov/pubmed/37397391 http://dx.doi.org/10.3389/fonc.2023.1175000 |
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author | Guo, Yangyang Cen, Kenan Yang, Shi Mai, Yifeng Hong, Kai |
author_facet | Guo, Yangyang Cen, Kenan Yang, Shi Mai, Yifeng Hong, Kai |
author_sort | Guo, Yangyang |
collection | PubMed |
description | BACKGROUND: Inflammation is one of the most important characteristics of tumor tissue. Signatures based on inflammatory response-related genes (IRGs) can predict prognosis and treatment response in a variety of tumors. However, the clear function of IRGs in the triple negative breast cancer (TNBC) still needs to be explored. METHODS: IRGs clusters were discovered via consensus clustering, and the prognostic differentially expressed genes (DEGs) across clusters were utilized to develop a signature using a least absolute shrinkage and selection operator (LASSO). Verification analyses were conducted to show the robustness of the signature. The expression of risk genes was identified by RT-qPCR. Lastly, we formulated a nomogram to improve the clinical efficacy of our predictive tool. RESULTS: The IRGs signature, comprised of four genes, was developed and was shown to be highly correlated with the prognoses of TNBC patients. In contrast with the performance of the other individual predictors, we discovered that the IRGs signature was remarkably superior. Also, the ImmuneScores were elevated in the low-risk group. The immune cell infiltration showed significant difference between the two groups, as did the expression of immune checkpoints. CONCLUSION: The IRGs signature could act as a biomarker and provide a momentous reference for individual therapy of TNBC. |
format | Online Article Text |
id | pubmed-10311032 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103110322023-07-01 Development and validation of an inflammatory response-related signature in triple negative breast cancer for predicting prognosis and immunotherapy Guo, Yangyang Cen, Kenan Yang, Shi Mai, Yifeng Hong, Kai Front Oncol Oncology BACKGROUND: Inflammation is one of the most important characteristics of tumor tissue. Signatures based on inflammatory response-related genes (IRGs) can predict prognosis and treatment response in a variety of tumors. However, the clear function of IRGs in the triple negative breast cancer (TNBC) still needs to be explored. METHODS: IRGs clusters were discovered via consensus clustering, and the prognostic differentially expressed genes (DEGs) across clusters were utilized to develop a signature using a least absolute shrinkage and selection operator (LASSO). Verification analyses were conducted to show the robustness of the signature. The expression of risk genes was identified by RT-qPCR. Lastly, we formulated a nomogram to improve the clinical efficacy of our predictive tool. RESULTS: The IRGs signature, comprised of four genes, was developed and was shown to be highly correlated with the prognoses of TNBC patients. In contrast with the performance of the other individual predictors, we discovered that the IRGs signature was remarkably superior. Also, the ImmuneScores were elevated in the low-risk group. The immune cell infiltration showed significant difference between the two groups, as did the expression of immune checkpoints. CONCLUSION: The IRGs signature could act as a biomarker and provide a momentous reference for individual therapy of TNBC. Frontiers Media S.A. 2023-06-15 /pmc/articles/PMC10311032/ /pubmed/37397391 http://dx.doi.org/10.3389/fonc.2023.1175000 Text en Copyright © 2023 Guo, Cen, Yang, Mai and Hong https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Guo, Yangyang Cen, Kenan Yang, Shi Mai, Yifeng Hong, Kai Development and validation of an inflammatory response-related signature in triple negative breast cancer for predicting prognosis and immunotherapy |
title | Development and validation of an inflammatory response-related signature in triple negative breast cancer for predicting prognosis and immunotherapy |
title_full | Development and validation of an inflammatory response-related signature in triple negative breast cancer for predicting prognosis and immunotherapy |
title_fullStr | Development and validation of an inflammatory response-related signature in triple negative breast cancer for predicting prognosis and immunotherapy |
title_full_unstemmed | Development and validation of an inflammatory response-related signature in triple negative breast cancer for predicting prognosis and immunotherapy |
title_short | Development and validation of an inflammatory response-related signature in triple negative breast cancer for predicting prognosis and immunotherapy |
title_sort | development and validation of an inflammatory response-related signature in triple negative breast cancer for predicting prognosis and immunotherapy |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10311032/ https://www.ncbi.nlm.nih.gov/pubmed/37397391 http://dx.doi.org/10.3389/fonc.2023.1175000 |
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