Cargando…

Combining iCn3D and NextStrain to create a novel undergraduate research experience around SARS-CoV-2 variants and commercial antibodies

Undergraduate research experiences are increasingly important in biology education with efforts underway to provide more projects by embedded them in a course. The shift to online learning at the beginning of the pandemic presented a challenge. How could biology instructors provide research experien...

Descripción completa

Detalles Bibliográficos
Autores principales:	Porter, Sandra G., Smith, Todd M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2023
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10311211/ https://www.ncbi.nlm.nih.gov/pubmed/37396037 http://dx.doi.org/10.3389/fgene.2023.1024063

Ejemplares similares

iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE
por: Norsigian, Charles J., et al.
Publicado: (2018)

Nextstrain: real-time tracking of pathogen evolution
por: Hadfield, James, et al.
Publicado: (2018)

iCn3D: From Web-Based 3D Viewer to Structural Analysis Tool in Batch Mode
por: Wang, Jiyao, et al.
Publicado: (2022)

3DVizSNP: a tool for rapidly visualizing missense mutations identified in high throughput experiments in iCn3D
por: Sierk, Michael, et al.
Publicado: (2023)

Using iCn3D and the World Wide Web for structure-based collaborative research: Analyzing molecular interactions at the root of COVID-19
por: Youkharibache, Philippe, et al.
Publicado: (2020)

Twenty years of West Nile virus spread and evolution in the Americas visualized by Nextstrain
por: Hadfield, James, et al.
Publicado: (2019)

Reflecting on ICN2: was it a game changer?
por: Brinsden, Hannah, et al.
Publicado: (2015)

Cache Scheme Based on Pre-Fetch Operation in ICN
por: Duan, Jie, et al.
Publicado: (2016)

Draft Genome Sequence of Streptomyces sp. Strain ICN903, Isolated from a Seaweed
por: Sam, Albert Joshua, et al.
Publicado: (2022)

Draft genome sequence of Streptomyces sp. strain ICN988, isolated from Gorgonia sp.
por: Nallathambi, Sangeetha, et al.
Publicado: (2023)

Satellite Network Task Deployment Method Based on SDN and ICN
por: Liu, Zhiguo, et al.
Publicado: (2022)

CurSa: scripts to curate metadata and sample genomes from GISAID for analysis and display in nextstrain and microreact
por: Delaye, Luis
Publicado: (2023)

Edge Caching Based on Collaborative Filtering for Heterogeneous ICN-IoT Applications
por: Gupta, Divya, et al.
Publicado: (2021)

Real-time tracking of Tomato brown rugose fruit virus (ToBRFV) outbreaks in the Netherlands using Nextstrain
por: van de Vossenberg, Bart T. L. H., et al.
Publicado: (2020)

Genetic and Antigenic Characterization of an Expanding H3 Influenza A Virus Clade in U.S. Swine Visualized by Nextstrain
por: Neveau, Megan N., et al.
Publicado: (2022)

Transparent CoAP Services to IoT Endpoints through ICN Operator Networks †
por: Islam, Hasan Mahmood Aminul, et al.
Publicado: (2019)

Genome Sequences of Three Atypical Xanthomonas campestris pv. campestris Strains, CN14, CN15, and CN16
por: Bolot, Stéphanie, et al.
Publicado: (2013)

Vibronic Dynamics of Photodissociating ICN from Simulations of Ultrafast X‐Ray Absorption Spectroscopy
por: Morzan, Uriel N., et al.
Publicado: (2020)

A Distributed NFV-Enabled Edge Cloud Architecture for ICN-Based Disaster Management Services
por: Nguyen, Van-Ca, et al.
Publicado: (2018)

ICN_Atlas: Automated description and quantification of functional MRI activation patterns in the framework of intrinsic connectivity networks
por: Kozák, Lajos R., et al.
Publicado: (2017)

Genetically modified endothelial progenitor cells with hNotch1.ICN overexpression display facilitated angiogenesis
por: Guo, Peng, et al.
Publicado: (2020)

Bioinformatics Tools and Databases to Assess the Pathogenicity of Mitochondrial DNA Variants in the Field of Next Generation Sequencing
por: Bris, Céline, et al.
Publicado: (2018)

SeqVItA: Sequence Variant Identification and Annotation Platform for Next Generation Sequencing Data
por: Dharanipragada, Prashanthi, et al.
Publicado: (2018)

Identification of an Endoglin Variant Associated With HCV-Related Liver Fibrosis Progression by Next-Generation Sequencing
por: About, Frédégonde, et al.
Publicado: (2019)

Next Generation Sequencing Identify Rare Copy Number Variants in Non-syndromic Patent Ductus Arteriosus
por: Chen, Bo, et al.
Publicado: (2020)

Identification of Variants Associated With Rare Hematological Disorder Erythrocytosis Using Targeted Next-Generation Sequencing Analysis
por: Kristan, Aleša, et al.
Publicado: (2021)

Analysis of chronic kidney disease patients by targeted next-generation sequencing identifies novel variants in kidney-related genes
por: Alaamery, Manal, et al.
Publicado: (2022)

Targeted next-generation sequencing for genetic variants of left ventricular mass status among community-based adults in Taiwan
por: Fan, Hsien-Yu, et al.
Publicado: (2023)

The impact of commercialization on the evaluation of DNA evidence
por: Jackson, Graham
Publicado: (2013)

Next-Generation Sequencing Analysis Reveals Novel Pathogenic Variants in Four Chinese Siblings With Late-Infantile Neuronal Ceroid Lipofuscinosis
por: Ren, Xiao-Tun, et al.
Publicado: (2019)

Oral ezatiostat HCl (Telintra(®), TLK199) and Idiopathic Chronic Neutropenia (ICN): a case report of complete response of a patient with G-CSF resistant ICN following treatment with ezatiostat, a glutathione S-transferase P1-1 (GSTP1-1) inhibitor
por: Lyons, Roger M, et al.
Publicado: (2011)

Next generation genetics
por: Fenger, Mogens
Publicado: (2014)

Genomic Analysis of IgG Antibody Response to Common Pathogens in Commercial Sows in Health-Challenged Herds
por: Sanglard, Leticia P., et al.
Publicado: (2020)

Using The Cancer Genome Atlas as an Inquiry Tool in the Undergraduate Classroom
por: Hankey, William, et al.
Publicado: (2020)

Rethinking (again) Hardy-Weinberg and genetic drift in undergraduate biology
por: Klymkowsky, Michael W.
Publicado: (2023)

Creating an Integrated Undergraduate Public Health Curricula: Inspiring the Next Generation to Solve Complex Public Health Issues
por: Osiecki, Kristin, et al.
Publicado: (2022)

Case report: A third variant in the 5′ UTR of TWIST1 creates a novel upstream translation initiation site in a child with Saethre-Chotzen syndrome
por: Diaz-Gonzalez, Francisca, et al.
Publicado: (2023)

Next-Generation Sequencing of PTGS Genes Reveals an Increased Frequency of Non-synonymous Variants Among Patients With NSAID-Induced Liver Injury
por: Lucena, María Isabel, et al.
Publicado: (2019)

Association of Rare Recurrent Copy Number Variants With Congenital Heart Defects Based on Next-Generation Sequencing Data From Family Trios
por: Liu, Yichuan, et al.
Publicado: (2019)

RAS Mutations and Oncogenesis: Not all RAS Mutations are Created Equally
por: Miller, Mark Steven, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_2rlvggs4k3md14p7ggq0sed38g