PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning

MOTIVATION: The analysis of bacterial isolates to detect plasmids is important due to their role in the propagation of antimicrobial resistance. In short-read sequence assemblies, both plasmids and bacterial chromosomes are typically split into several contigs of various lengths, making identificati...

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Detalles Bibliográficos
Autores principales: Mane, Aniket, Faizrahnemoon, Mahsa, Vinař, Tomáš, Brejová, Broňa, Chauve, Cedric
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Genome Sequence Analysis
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10311310/
https://www.ncbi.nlm.nih.gov/pubmed/37387134
http://dx.doi.org/10.1093/bioinformatics/btad250

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10311310/
https://www.ncbi.nlm.nih.gov/pubmed/37387134
http://dx.doi.org/10.1093/bioinformatics/btad250

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