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NetPlotBrain: A Python package for visualizing networks and brains
Visualizations of networks are complex since they are multidimensional and generally convey large amounts of information. The layout of the visualization can communicate either network properties or spatial properties of the network. Generating such figures to effectively convey information and be a...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MIT Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10312269/ https://www.ncbi.nlm.nih.gov/pubmed/37397883 http://dx.doi.org/10.1162/netn_a_00313 |
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author | Fanton, Silvia Thompson, William Hedley |
author_facet | Fanton, Silvia Thompson, William Hedley |
author_sort | Fanton, Silvia |
collection | PubMed |
description | Visualizations of networks are complex since they are multidimensional and generally convey large amounts of information. The layout of the visualization can communicate either network properties or spatial properties of the network. Generating such figures to effectively convey information and be accurate can be difficult and time-consuming, and it can require expert knowledge. Here, we introduce NetPlotBrain (short for network plots onto brains), a Python package for Python 3.9+. The package offers several advantages. First, NetPlotBrain provides a high-level interface to easily highlight and customize results of interest. Second, it presents a solution to promote accurate plots through its integration with TemplateFlow. Third, it integrates with other Python software, allowing for easy integration to include networks from NetworkX or implementations of network-based statistics. In sum, NetPlotBrain is a versatile but easy to use package designed to produce high-quality network figures while integrating with open research software for neuroimaging and network theory. |
format | Online Article Text |
id | pubmed-10312269 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MIT Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-103122692023-07-01 NetPlotBrain: A Python package for visualizing networks and brains Fanton, Silvia Thompson, William Hedley Netw Neurosci Research Article Visualizations of networks are complex since they are multidimensional and generally convey large amounts of information. The layout of the visualization can communicate either network properties or spatial properties of the network. Generating such figures to effectively convey information and be accurate can be difficult and time-consuming, and it can require expert knowledge. Here, we introduce NetPlotBrain (short for network plots onto brains), a Python package for Python 3.9+. The package offers several advantages. First, NetPlotBrain provides a high-level interface to easily highlight and customize results of interest. Second, it presents a solution to promote accurate plots through its integration with TemplateFlow. Third, it integrates with other Python software, allowing for easy integration to include networks from NetworkX or implementations of network-based statistics. In sum, NetPlotBrain is a versatile but easy to use package designed to produce high-quality network figures while integrating with open research software for neuroimaging and network theory. MIT Press 2023-06-30 /pmc/articles/PMC10312269/ /pubmed/37397883 http://dx.doi.org/10.1162/netn_a_00313 Text en © 2023 Massachusetts Institute of Technology https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. For a full description of the license, please visit https://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Research Article Fanton, Silvia Thompson, William Hedley NetPlotBrain: A Python package for visualizing networks and brains |
title | NetPlotBrain: A Python package for visualizing networks and brains |
title_full | NetPlotBrain: A Python package for visualizing networks and brains |
title_fullStr | NetPlotBrain: A Python package for visualizing networks and brains |
title_full_unstemmed | NetPlotBrain: A Python package for visualizing networks and brains |
title_short | NetPlotBrain: A Python package for visualizing networks and brains |
title_sort | netplotbrain: a python package for visualizing networks and brains |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10312269/ https://www.ncbi.nlm.nih.gov/pubmed/37397883 http://dx.doi.org/10.1162/netn_a_00313 |
work_keys_str_mv | AT fantonsilvia netplotbrainapythonpackageforvisualizingnetworksandbrains AT thompsonwilliamhedley netplotbrainapythonpackageforvisualizingnetworksandbrains |