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An Early Adverse Drug Event Detection Approach with False Discovery Rate Control
Adverse drug event (ADE) is a significant challenge in clinical practice. Many ADEs have not been identified timely after the approval of the corresponding drugs. Despite the use of drug similarity network demonstrates early success on improving ADE detection, false discovery rate (FDR) control rema...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10312832/ https://www.ncbi.nlm.nih.gov/pubmed/37398083 http://dx.doi.org/10.1101/2023.05.31.23290792 |
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author | Shi, Yi Peng, Xueqiao Liu, Ruoqi Sun, Anna Yang, Yuedi Zhang, Ping Zhang, Pengyue |
author_facet | Shi, Yi Peng, Xueqiao Liu, Ruoqi Sun, Anna Yang, Yuedi Zhang, Ping Zhang, Pengyue |
author_sort | Shi, Yi |
collection | PubMed |
description | Adverse drug event (ADE) is a significant challenge in clinical practice. Many ADEs have not been identified timely after the approval of the corresponding drugs. Despite the use of drug similarity network demonstrates early success on improving ADE detection, false discovery rate (FDR) control remains unclear in its application. Additionally, performance of early ADE detection has not been explicitly investigated under the time-to-event framework. In this manuscript, we propose to use the drug similarity based posterior probability of null hypothesis for early ADE detection. The proposed approach is also able to control FDR for monitoring a large number of ADEs of multiple drugs. The proposed approach outperforms existing approaches on mining labeled ADEs in the US FDA’s Adverse Event Reporting System (FAERS) data, especially in the first few years after the drug initial reporting time. Additionally, the proposed approach is able to identify more labeled ADEs and has significantly lower time to ADE detection. In simulation study, the proposed approach demonstrates proper FDR control, as well as has better true positive rate and an excellent true negative rate. In our exemplified FAERS analysis, the proposed approach detects new ADE signals and identifies ADE signals in a timelier fashion than existing approach. In conclusion, the proposed approach is able to both reduce the time and improve the FDR control for ADE detection. |
format | Online Article Text |
id | pubmed-10312832 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-103128322023-07-01 An Early Adverse Drug Event Detection Approach with False Discovery Rate Control Shi, Yi Peng, Xueqiao Liu, Ruoqi Sun, Anna Yang, Yuedi Zhang, Ping Zhang, Pengyue medRxiv Article Adverse drug event (ADE) is a significant challenge in clinical practice. Many ADEs have not been identified timely after the approval of the corresponding drugs. Despite the use of drug similarity network demonstrates early success on improving ADE detection, false discovery rate (FDR) control remains unclear in its application. Additionally, performance of early ADE detection has not been explicitly investigated under the time-to-event framework. In this manuscript, we propose to use the drug similarity based posterior probability of null hypothesis for early ADE detection. The proposed approach is also able to control FDR for monitoring a large number of ADEs of multiple drugs. The proposed approach outperforms existing approaches on mining labeled ADEs in the US FDA’s Adverse Event Reporting System (FAERS) data, especially in the first few years after the drug initial reporting time. Additionally, the proposed approach is able to identify more labeled ADEs and has significantly lower time to ADE detection. In simulation study, the proposed approach demonstrates proper FDR control, as well as has better true positive rate and an excellent true negative rate. In our exemplified FAERS analysis, the proposed approach detects new ADE signals and identifies ADE signals in a timelier fashion than existing approach. In conclusion, the proposed approach is able to both reduce the time and improve the FDR control for ADE detection. Cold Spring Harbor Laboratory 2023-06-04 /pmc/articles/PMC10312832/ /pubmed/37398083 http://dx.doi.org/10.1101/2023.05.31.23290792 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator. |
spellingShingle | Article Shi, Yi Peng, Xueqiao Liu, Ruoqi Sun, Anna Yang, Yuedi Zhang, Ping Zhang, Pengyue An Early Adverse Drug Event Detection Approach with False Discovery Rate Control |
title | An Early Adverse Drug Event Detection Approach with False Discovery Rate Control |
title_full | An Early Adverse Drug Event Detection Approach with False Discovery Rate Control |
title_fullStr | An Early Adverse Drug Event Detection Approach with False Discovery Rate Control |
title_full_unstemmed | An Early Adverse Drug Event Detection Approach with False Discovery Rate Control |
title_short | An Early Adverse Drug Event Detection Approach with False Discovery Rate Control |
title_sort | early adverse drug event detection approach with false discovery rate control |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10312832/ https://www.ncbi.nlm.nih.gov/pubmed/37398083 http://dx.doi.org/10.1101/2023.05.31.23290792 |
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