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Fostering transparent medical image AI via an image-text foundation model grounded in medical literature

Building trustworthy and transparent image-based medical AI systems requires the ability to interrogate data and models at all stages of the development pipeline: from training models to post-deployment monitoring. Ideally, the data and associated AI systems could be described using terms already fa...

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Autores principales: Kim, Chanwoo, Gadgil, Soham U., DeGrave, Alex J., Cai, Zhuo Ran, Daneshjou, Roxana, Lee, Su-In
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10312868/
https://www.ncbi.nlm.nih.gov/pubmed/37398017
http://dx.doi.org/10.1101/2023.06.07.23291119
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author Kim, Chanwoo
Gadgil, Soham U.
DeGrave, Alex J.
Cai, Zhuo Ran
Daneshjou, Roxana
Lee, Su-In
author_facet Kim, Chanwoo
Gadgil, Soham U.
DeGrave, Alex J.
Cai, Zhuo Ran
Daneshjou, Roxana
Lee, Su-In
author_sort Kim, Chanwoo
collection PubMed
description Building trustworthy and transparent image-based medical AI systems requires the ability to interrogate data and models at all stages of the development pipeline: from training models to post-deployment monitoring. Ideally, the data and associated AI systems could be described using terms already familiar to physicians, but this requires medical datasets densely annotated with semantically meaningful concepts. Here, we present a foundation model approach, named MONET (Medical cONcept rETriever), which learns how to connect medical images with text and generates dense concept annotations to enable tasks in AI transparency from model auditing to model interpretation. Dermatology provides a demanding use case for the versatility of MONET, due to the heterogeneity in diseases, skin tones, and imaging modalities. We trained MONET on the basis of 105,550 dermatological images paired with natural language descriptions from a large collection of medical literature. MONET can accurately annotate concepts across dermatology images as verified by board-certified dermatologists, outperforming supervised models built on previously concept-annotated dermatology datasets. We demonstrate how MONET enables AI transparency across the entire AI development pipeline from dataset auditing to model auditing to building inherently interpretable models.
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spelling pubmed-103128682023-07-01 Fostering transparent medical image AI via an image-text foundation model grounded in medical literature Kim, Chanwoo Gadgil, Soham U. DeGrave, Alex J. Cai, Zhuo Ran Daneshjou, Roxana Lee, Su-In medRxiv Article Building trustworthy and transparent image-based medical AI systems requires the ability to interrogate data and models at all stages of the development pipeline: from training models to post-deployment monitoring. Ideally, the data and associated AI systems could be described using terms already familiar to physicians, but this requires medical datasets densely annotated with semantically meaningful concepts. Here, we present a foundation model approach, named MONET (Medical cONcept rETriever), which learns how to connect medical images with text and generates dense concept annotations to enable tasks in AI transparency from model auditing to model interpretation. Dermatology provides a demanding use case for the versatility of MONET, due to the heterogeneity in diseases, skin tones, and imaging modalities. We trained MONET on the basis of 105,550 dermatological images paired with natural language descriptions from a large collection of medical literature. MONET can accurately annotate concepts across dermatology images as verified by board-certified dermatologists, outperforming supervised models built on previously concept-annotated dermatology datasets. We demonstrate how MONET enables AI transparency across the entire AI development pipeline from dataset auditing to model auditing to building inherently interpretable models. Cold Spring Harbor Laboratory 2023-06-12 /pmc/articles/PMC10312868/ /pubmed/37398017 http://dx.doi.org/10.1101/2023.06.07.23291119 Text en https://creativecommons.org/licenses/by-nc/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License (https://creativecommons.org/licenses/by-nc/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Kim, Chanwoo
Gadgil, Soham U.
DeGrave, Alex J.
Cai, Zhuo Ran
Daneshjou, Roxana
Lee, Su-In
Fostering transparent medical image AI via an image-text foundation model grounded in medical literature
title Fostering transparent medical image AI via an image-text foundation model grounded in medical literature
title_full Fostering transparent medical image AI via an image-text foundation model grounded in medical literature
title_fullStr Fostering transparent medical image AI via an image-text foundation model grounded in medical literature
title_full_unstemmed Fostering transparent medical image AI via an image-text foundation model grounded in medical literature
title_short Fostering transparent medical image AI via an image-text foundation model grounded in medical literature
title_sort fostering transparent medical image ai via an image-text foundation model grounded in medical literature
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10312868/
https://www.ncbi.nlm.nih.gov/pubmed/37398017
http://dx.doi.org/10.1101/2023.06.07.23291119
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