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Identification of MiR-223 Associated with Diagnosis in Ectopic Pregnancy

BACKGROUND: In this study, we conducted an integrated study of the diagnostic value of MiR-223 in ectopic pregnancy (EP). METHODS: We used GSE44731 downloaded from GEO and GEO2R to identify differentially expressed miRNA. The hub genes corresponding to the differential miRNA were then identified by...

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Autores principales: Qiu, Jiahan, Chen, Jiaxun, Deng, Gaopi, Yuan, Shuo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10314770/
https://www.ncbi.nlm.nih.gov/pubmed/37398511
http://dx.doi.org/10.2147/IJGM.S412439
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author Qiu, Jiahan
Chen, Jiaxun
Deng, Gaopi
Yuan, Shuo
author_facet Qiu, Jiahan
Chen, Jiaxun
Deng, Gaopi
Yuan, Shuo
author_sort Qiu, Jiahan
collection PubMed
description BACKGROUND: In this study, we conducted an integrated study of the diagnostic value of MiR-223 in ectopic pregnancy (EP). METHODS: We used GSE44731 downloaded from GEO and GEO2R to identify differentially expressed miRNA. The hub genes corresponding to the differential miRNA were then identified by using the Xiantao academic tool, GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes). Afterward, we used the miEAA database to perform gene set enrichment analysis (GSEA) of differential miRNA, and used Xiantao academic tools again to conduct the ceRNA network based on the target genes. Protein–protein interaction (PPI) network construction and lncRNA of hub miRNA target genes were then predicted by the starbase database. For validation, the villus tissue from intrauterine pregnancy and tubal pregnancy was collected and assayed by qPCR. RESULTS: In total 19 differentially expressed miRNAs were screened out, of which MiR-223 had a relatively clear diagnostic significance. Hub genes were enriched and analyzed by GO, KEGG, and GSEA, and the results showed that regulation of NF-κB and other signaling pathways are primarily enriched in ectopic pregnancy. We also obtained 215 key genes from PPI analysis. Our ceRNA analysis indicated that LRRC75A-AS1 and PITPNA-AS1 were associated with MiR-223, and the expression of MiR-223 in qPCR was significantly high in tubal pregnancy group. CONCLUSION: We found that MiR-223 can be used in the diagnosis of EP. Our findings provide valuable information and direction for future research into novel targets for EP diagnosis.
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spelling pubmed-103147702023-07-02 Identification of MiR-223 Associated with Diagnosis in Ectopic Pregnancy Qiu, Jiahan Chen, Jiaxun Deng, Gaopi Yuan, Shuo Int J Gen Med Original Research BACKGROUND: In this study, we conducted an integrated study of the diagnostic value of MiR-223 in ectopic pregnancy (EP). METHODS: We used GSE44731 downloaded from GEO and GEO2R to identify differentially expressed miRNA. The hub genes corresponding to the differential miRNA were then identified by using the Xiantao academic tool, GO (Gene Ontology), and KEGG (Kyoto Encyclopedia of Genes and Genomes). Afterward, we used the miEAA database to perform gene set enrichment analysis (GSEA) of differential miRNA, and used Xiantao academic tools again to conduct the ceRNA network based on the target genes. Protein–protein interaction (PPI) network construction and lncRNA of hub miRNA target genes were then predicted by the starbase database. For validation, the villus tissue from intrauterine pregnancy and tubal pregnancy was collected and assayed by qPCR. RESULTS: In total 19 differentially expressed miRNAs were screened out, of which MiR-223 had a relatively clear diagnostic significance. Hub genes were enriched and analyzed by GO, KEGG, and GSEA, and the results showed that regulation of NF-κB and other signaling pathways are primarily enriched in ectopic pregnancy. We also obtained 215 key genes from PPI analysis. Our ceRNA analysis indicated that LRRC75A-AS1 and PITPNA-AS1 were associated with MiR-223, and the expression of MiR-223 in qPCR was significantly high in tubal pregnancy group. CONCLUSION: We found that MiR-223 can be used in the diagnosis of EP. Our findings provide valuable information and direction for future research into novel targets for EP diagnosis. Dove 2023-06-27 /pmc/articles/PMC10314770/ /pubmed/37398511 http://dx.doi.org/10.2147/IJGM.S412439 Text en © 2023 Qiu et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Qiu, Jiahan
Chen, Jiaxun
Deng, Gaopi
Yuan, Shuo
Identification of MiR-223 Associated with Diagnosis in Ectopic Pregnancy
title Identification of MiR-223 Associated with Diagnosis in Ectopic Pregnancy
title_full Identification of MiR-223 Associated with Diagnosis in Ectopic Pregnancy
title_fullStr Identification of MiR-223 Associated with Diagnosis in Ectopic Pregnancy
title_full_unstemmed Identification of MiR-223 Associated with Diagnosis in Ectopic Pregnancy
title_short Identification of MiR-223 Associated with Diagnosis in Ectopic Pregnancy
title_sort identification of mir-223 associated with diagnosis in ectopic pregnancy
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10314770/
https://www.ncbi.nlm.nih.gov/pubmed/37398511
http://dx.doi.org/10.2147/IJGM.S412439
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