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Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility

Collaborative neuroimaging research is often hindered by technological, policy, administrative, and methodological barriers, despite the abundance of available data. COINSTAC (The Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation) is a platform that successfully tack...

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Autores principales: Martin, Dylan, Basodi, Sunitha, Panta, Sandeep, Rootes-Murdy, Kelly, Prae, Paul, Sarwate, Anand D., Kelly, Ross, Romero, Javier, Baker, Bradley T., Gazula, Harshvardhan, Bockholt, Jeremy, Turner, Jessica A., Esper, Nathalia B., Franco, Alexandre R., Plis, Sergey, Calhoun, Vince D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10315678/
https://www.ncbi.nlm.nih.gov/pubmed/37404336
http://dx.doi.org/10.3389/fninf.2023.1207721
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author Martin, Dylan
Basodi, Sunitha
Panta, Sandeep
Rootes-Murdy, Kelly
Prae, Paul
Sarwate, Anand D.
Kelly, Ross
Romero, Javier
Baker, Bradley T.
Gazula, Harshvardhan
Bockholt, Jeremy
Turner, Jessica A.
Esper, Nathalia B.
Franco, Alexandre R.
Plis, Sergey
Calhoun, Vince D.
author_facet Martin, Dylan
Basodi, Sunitha
Panta, Sandeep
Rootes-Murdy, Kelly
Prae, Paul
Sarwate, Anand D.
Kelly, Ross
Romero, Javier
Baker, Bradley T.
Gazula, Harshvardhan
Bockholt, Jeremy
Turner, Jessica A.
Esper, Nathalia B.
Franco, Alexandre R.
Plis, Sergey
Calhoun, Vince D.
author_sort Martin, Dylan
collection PubMed
description Collaborative neuroimaging research is often hindered by technological, policy, administrative, and methodological barriers, despite the abundance of available data. COINSTAC (The Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation) is a platform that successfully tackles these challenges through federated analysis, allowing researchers to analyze datasets without publicly sharing their data. This paper presents a significant enhancement to the COINSTAC platform: COINSTAC Vaults (CVs). CVs are designed to further reduce barriers by hosting standardized, persistent, and highly-available datasets, while seamlessly integrating with COINSTAC's federated analysis capabilities. CVs offer a user-friendly interface for self-service analysis, streamlining collaboration, and eliminating the need for manual coordination with data owners. Importantly, CVs can also be used in conjunction with open data as well, by simply creating a CV hosting the open data one would like to include in the analysis, thus filling an important gap in the data sharing ecosystem. We demonstrate the impact of CVs through several functional and structural neuroimaging studies utilizing federated analysis showcasing their potential to improve the reproducibility of research and increase sample sizes in neuroimaging studies.
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spelling pubmed-103156782023-07-04 Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility Martin, Dylan Basodi, Sunitha Panta, Sandeep Rootes-Murdy, Kelly Prae, Paul Sarwate, Anand D. Kelly, Ross Romero, Javier Baker, Bradley T. Gazula, Harshvardhan Bockholt, Jeremy Turner, Jessica A. Esper, Nathalia B. Franco, Alexandre R. Plis, Sergey Calhoun, Vince D. Front Neuroinform Neuroscience Collaborative neuroimaging research is often hindered by technological, policy, administrative, and methodological barriers, despite the abundance of available data. COINSTAC (The Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation) is a platform that successfully tackles these challenges through federated analysis, allowing researchers to analyze datasets without publicly sharing their data. This paper presents a significant enhancement to the COINSTAC platform: COINSTAC Vaults (CVs). CVs are designed to further reduce barriers by hosting standardized, persistent, and highly-available datasets, while seamlessly integrating with COINSTAC's federated analysis capabilities. CVs offer a user-friendly interface for self-service analysis, streamlining collaboration, and eliminating the need for manual coordination with data owners. Importantly, CVs can also be used in conjunction with open data as well, by simply creating a CV hosting the open data one would like to include in the analysis, thus filling an important gap in the data sharing ecosystem. We demonstrate the impact of CVs through several functional and structural neuroimaging studies utilizing federated analysis showcasing their potential to improve the reproducibility of research and increase sample sizes in neuroimaging studies. Frontiers Media S.A. 2023-06-19 /pmc/articles/PMC10315678/ /pubmed/37404336 http://dx.doi.org/10.3389/fninf.2023.1207721 Text en Copyright © 2023 Martin, Basodi, Panta, Rootes-Murdy, Prae, Sarwate, Kelly, Romero, Baker, Gazula, Bockholt, Turner, Esper, Franco, Plis and Calhoun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Martin, Dylan
Basodi, Sunitha
Panta, Sandeep
Rootes-Murdy, Kelly
Prae, Paul
Sarwate, Anand D.
Kelly, Ross
Romero, Javier
Baker, Bradley T.
Gazula, Harshvardhan
Bockholt, Jeremy
Turner, Jessica A.
Esper, Nathalia B.
Franco, Alexandre R.
Plis, Sergey
Calhoun, Vince D.
Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility
title Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility
title_full Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility
title_fullStr Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility
title_full_unstemmed Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility
title_short Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility
title_sort enhancing collaborative neuroimaging research: introducing coinstac vaults for federated analysis and reproducibility
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10315678/
https://www.ncbi.nlm.nih.gov/pubmed/37404336
http://dx.doi.org/10.3389/fninf.2023.1207721
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