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Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility
Collaborative neuroimaging research is often hindered by technological, policy, administrative, and methodological barriers, despite the abundance of available data. COINSTAC (The Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation) is a platform that successfully tack...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10315678/ https://www.ncbi.nlm.nih.gov/pubmed/37404336 http://dx.doi.org/10.3389/fninf.2023.1207721 |
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author | Martin, Dylan Basodi, Sunitha Panta, Sandeep Rootes-Murdy, Kelly Prae, Paul Sarwate, Anand D. Kelly, Ross Romero, Javier Baker, Bradley T. Gazula, Harshvardhan Bockholt, Jeremy Turner, Jessica A. Esper, Nathalia B. Franco, Alexandre R. Plis, Sergey Calhoun, Vince D. |
author_facet | Martin, Dylan Basodi, Sunitha Panta, Sandeep Rootes-Murdy, Kelly Prae, Paul Sarwate, Anand D. Kelly, Ross Romero, Javier Baker, Bradley T. Gazula, Harshvardhan Bockholt, Jeremy Turner, Jessica A. Esper, Nathalia B. Franco, Alexandre R. Plis, Sergey Calhoun, Vince D. |
author_sort | Martin, Dylan |
collection | PubMed |
description | Collaborative neuroimaging research is often hindered by technological, policy, administrative, and methodological barriers, despite the abundance of available data. COINSTAC (The Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation) is a platform that successfully tackles these challenges through federated analysis, allowing researchers to analyze datasets without publicly sharing their data. This paper presents a significant enhancement to the COINSTAC platform: COINSTAC Vaults (CVs). CVs are designed to further reduce barriers by hosting standardized, persistent, and highly-available datasets, while seamlessly integrating with COINSTAC's federated analysis capabilities. CVs offer a user-friendly interface for self-service analysis, streamlining collaboration, and eliminating the need for manual coordination with data owners. Importantly, CVs can also be used in conjunction with open data as well, by simply creating a CV hosting the open data one would like to include in the analysis, thus filling an important gap in the data sharing ecosystem. We demonstrate the impact of CVs through several functional and structural neuroimaging studies utilizing federated analysis showcasing their potential to improve the reproducibility of research and increase sample sizes in neuroimaging studies. |
format | Online Article Text |
id | pubmed-10315678 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103156782023-07-04 Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility Martin, Dylan Basodi, Sunitha Panta, Sandeep Rootes-Murdy, Kelly Prae, Paul Sarwate, Anand D. Kelly, Ross Romero, Javier Baker, Bradley T. Gazula, Harshvardhan Bockholt, Jeremy Turner, Jessica A. Esper, Nathalia B. Franco, Alexandre R. Plis, Sergey Calhoun, Vince D. Front Neuroinform Neuroscience Collaborative neuroimaging research is often hindered by technological, policy, administrative, and methodological barriers, despite the abundance of available data. COINSTAC (The Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation) is a platform that successfully tackles these challenges through federated analysis, allowing researchers to analyze datasets without publicly sharing their data. This paper presents a significant enhancement to the COINSTAC platform: COINSTAC Vaults (CVs). CVs are designed to further reduce barriers by hosting standardized, persistent, and highly-available datasets, while seamlessly integrating with COINSTAC's federated analysis capabilities. CVs offer a user-friendly interface for self-service analysis, streamlining collaboration, and eliminating the need for manual coordination with data owners. Importantly, CVs can also be used in conjunction with open data as well, by simply creating a CV hosting the open data one would like to include in the analysis, thus filling an important gap in the data sharing ecosystem. We demonstrate the impact of CVs through several functional and structural neuroimaging studies utilizing federated analysis showcasing their potential to improve the reproducibility of research and increase sample sizes in neuroimaging studies. Frontiers Media S.A. 2023-06-19 /pmc/articles/PMC10315678/ /pubmed/37404336 http://dx.doi.org/10.3389/fninf.2023.1207721 Text en Copyright © 2023 Martin, Basodi, Panta, Rootes-Murdy, Prae, Sarwate, Kelly, Romero, Baker, Gazula, Bockholt, Turner, Esper, Franco, Plis and Calhoun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Martin, Dylan Basodi, Sunitha Panta, Sandeep Rootes-Murdy, Kelly Prae, Paul Sarwate, Anand D. Kelly, Ross Romero, Javier Baker, Bradley T. Gazula, Harshvardhan Bockholt, Jeremy Turner, Jessica A. Esper, Nathalia B. Franco, Alexandre R. Plis, Sergey Calhoun, Vince D. Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility |
title | Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility |
title_full | Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility |
title_fullStr | Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility |
title_full_unstemmed | Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility |
title_short | Enhancing collaborative neuroimaging research: introducing COINSTAC Vaults for federated analysis and reproducibility |
title_sort | enhancing collaborative neuroimaging research: introducing coinstac vaults for federated analysis and reproducibility |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10315678/ https://www.ncbi.nlm.nih.gov/pubmed/37404336 http://dx.doi.org/10.3389/fninf.2023.1207721 |
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