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Identification of potential drug targets for varicose veins: a Mendelian randomization analysis
INTRODUCTION: Varicose veins are a common chronic disease that creates a significant economic burden on the healthcare system. Current treatment options, including pharmacological treatments, are not always effective, and there is a need for more targeted therapies. A Mendelian randomization (MR) me...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10315832/ https://www.ncbi.nlm.nih.gov/pubmed/37404740 http://dx.doi.org/10.3389/fcvm.2023.1126208 |
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author | Lin, Jianfeng Zhou, Jiawei Liu, Zhili Zeng, Rong Wang, Lei Li, Fangda Cui, Liqiang Zheng, Yuehong |
author_facet | Lin, Jianfeng Zhou, Jiawei Liu, Zhili Zeng, Rong Wang, Lei Li, Fangda Cui, Liqiang Zheng, Yuehong |
author_sort | Lin, Jianfeng |
collection | PubMed |
description | INTRODUCTION: Varicose veins are a common chronic disease that creates a significant economic burden on the healthcare system. Current treatment options, including pharmacological treatments, are not always effective, and there is a need for more targeted therapies. A Mendelian randomization (MR) method uses genetic variants as instrumental variables to estimate the causal effect of an exposure on an outcome, and it has been successful in identifying therapeutic targets in other diseases. However, few studies have used MR to explore potential protein drug targets for varicose veins. METHODS: To identify potential drug targets for varicose veins of lower extremities, we undertook a comprehensive screen of plasma protein with a two-sample MR method. We used recently reported cis-variants as genetic instruments of 2,004 plasma proteins, then applied MR to a recent meta-analysis of genome-wide association study on varicose veins (22,037 cases and 437,665 controls). Furthermore, pleiotropy detection, reverse causality testing, colocalization analysis, and external replication were utilized to strengthen the causal effects of prioritized proteins. Phenome-wide MR (PheW-MR) of the prioritized proteins for the risk of 525 diseases was conducted to screen potential side effects. RESULTS: We identified eight plasma proteins that are significantly associated with the risk of varicose veins after Bonferroni correction (P < 2.495 × 10(−5)), with five being protective (LUM, POSTN, RPN1, RSPO3, and VAT1) and three harmful (COLEC11, IRF3, and SARS2). Most identified proteins showed no pleiotropic effects except for COLLEC11. Bidirectional MR and MR Steiger testing excluded reverse causal relationship between varicose veins and prioritized proteins. The colocalization analysis indicated that COLEC11, IRF3, LUM, POSTN, RSPO3, and SARS2 shared the same causal variant with varicose veins. Finally, seven identified proteins replicated with alternative instruments except for VAT1. Furthermore, PheW-MR revealed that only IRF3 had potential harmful adverse side effects. CONCLUSIONS: We identified eight potential causal proteins for varicose veins with MR. A comprehensive analysis indicated that IRF3, LUM, POSTN, RSPO3, and SARS2 might be potential drug targets for varicose veins. |
format | Online Article Text |
id | pubmed-10315832 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103158322023-07-04 Identification of potential drug targets for varicose veins: a Mendelian randomization analysis Lin, Jianfeng Zhou, Jiawei Liu, Zhili Zeng, Rong Wang, Lei Li, Fangda Cui, Liqiang Zheng, Yuehong Front Cardiovasc Med Cardiovascular Medicine INTRODUCTION: Varicose veins are a common chronic disease that creates a significant economic burden on the healthcare system. Current treatment options, including pharmacological treatments, are not always effective, and there is a need for more targeted therapies. A Mendelian randomization (MR) method uses genetic variants as instrumental variables to estimate the causal effect of an exposure on an outcome, and it has been successful in identifying therapeutic targets in other diseases. However, few studies have used MR to explore potential protein drug targets for varicose veins. METHODS: To identify potential drug targets for varicose veins of lower extremities, we undertook a comprehensive screen of plasma protein with a two-sample MR method. We used recently reported cis-variants as genetic instruments of 2,004 plasma proteins, then applied MR to a recent meta-analysis of genome-wide association study on varicose veins (22,037 cases and 437,665 controls). Furthermore, pleiotropy detection, reverse causality testing, colocalization analysis, and external replication were utilized to strengthen the causal effects of prioritized proteins. Phenome-wide MR (PheW-MR) of the prioritized proteins for the risk of 525 diseases was conducted to screen potential side effects. RESULTS: We identified eight plasma proteins that are significantly associated with the risk of varicose veins after Bonferroni correction (P < 2.495 × 10(−5)), with five being protective (LUM, POSTN, RPN1, RSPO3, and VAT1) and three harmful (COLEC11, IRF3, and SARS2). Most identified proteins showed no pleiotropic effects except for COLLEC11. Bidirectional MR and MR Steiger testing excluded reverse causal relationship between varicose veins and prioritized proteins. The colocalization analysis indicated that COLEC11, IRF3, LUM, POSTN, RSPO3, and SARS2 shared the same causal variant with varicose veins. Finally, seven identified proteins replicated with alternative instruments except for VAT1. Furthermore, PheW-MR revealed that only IRF3 had potential harmful adverse side effects. CONCLUSIONS: We identified eight potential causal proteins for varicose veins with MR. A comprehensive analysis indicated that IRF3, LUM, POSTN, RSPO3, and SARS2 might be potential drug targets for varicose veins. Frontiers Media S.A. 2023-06-19 /pmc/articles/PMC10315832/ /pubmed/37404740 http://dx.doi.org/10.3389/fcvm.2023.1126208 Text en © 2023 Lin, Zhou, Liu, Zeng, Wang, Li, Cui and Zheng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cardiovascular Medicine Lin, Jianfeng Zhou, Jiawei Liu, Zhili Zeng, Rong Wang, Lei Li, Fangda Cui, Liqiang Zheng, Yuehong Identification of potential drug targets for varicose veins: a Mendelian randomization analysis |
title | Identification of potential drug targets for varicose veins: a Mendelian randomization analysis |
title_full | Identification of potential drug targets for varicose veins: a Mendelian randomization analysis |
title_fullStr | Identification of potential drug targets for varicose veins: a Mendelian randomization analysis |
title_full_unstemmed | Identification of potential drug targets for varicose veins: a Mendelian randomization analysis |
title_short | Identification of potential drug targets for varicose veins: a Mendelian randomization analysis |
title_sort | identification of potential drug targets for varicose veins: a mendelian randomization analysis |
topic | Cardiovascular Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10315832/ https://www.ncbi.nlm.nih.gov/pubmed/37404740 http://dx.doi.org/10.3389/fcvm.2023.1126208 |
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