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Learning from the past: A short term forecast method for the COVID-19 incidence curve

The COVID-19 pandemy has created a radically new situation where most countries provide raw measurements of their daily incidence and disclose them in real time. This enables new machine learning forecast strategies where the prediction might no longer be based just on the past values of the current...

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Detalles Bibliográficos
Autores principales: Morel, Jean-David, Morel, Jean-Michel, Alvarez, Luis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10317234/
https://www.ncbi.nlm.nih.gov/pubmed/37343039
http://dx.doi.org/10.1371/journal.pcbi.1010790
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author Morel, Jean-David
Morel, Jean-Michel
Alvarez, Luis
author_facet Morel, Jean-David
Morel, Jean-Michel
Alvarez, Luis
author_sort Morel, Jean-David
collection PubMed
description The COVID-19 pandemy has created a radically new situation where most countries provide raw measurements of their daily incidence and disclose them in real time. This enables new machine learning forecast strategies where the prediction might no longer be based just on the past values of the current incidence curve, but could take advantage of observations in many countries. We present such a simple global machine learning procedure using all past daily incidence trend curves. Each of the 27,418 COVID-19 incidence trend curves in our database contains the values of 56 consecutive days extracted from observed incidence curves across 61 world regions and countries. Given a current incidence trend curve observed over the past four weeks, its forecast in the next four weeks is computed by matching it with the first four weeks of all samples, and ranking them by their similarity to the query curve. Then the 28 days forecast is obtained by a statistical estimation combining the values of the 28 last observed days in those similar samples. Using comparison performed by the European Covid-19 Forecast Hub with the current state of the art forecast methods, we verify that the proposed global learning method, EpiLearn, compares favorably to methods forecasting from a single past curve.
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spelling pubmed-103172342023-07-04 Learning from the past: A short term forecast method for the COVID-19 incidence curve Morel, Jean-David Morel, Jean-Michel Alvarez, Luis PLoS Comput Biol Research Article The COVID-19 pandemy has created a radically new situation where most countries provide raw measurements of their daily incidence and disclose them in real time. This enables new machine learning forecast strategies where the prediction might no longer be based just on the past values of the current incidence curve, but could take advantage of observations in many countries. We present such a simple global machine learning procedure using all past daily incidence trend curves. Each of the 27,418 COVID-19 incidence trend curves in our database contains the values of 56 consecutive days extracted from observed incidence curves across 61 world regions and countries. Given a current incidence trend curve observed over the past four weeks, its forecast in the next four weeks is computed by matching it with the first four weeks of all samples, and ranking them by their similarity to the query curve. Then the 28 days forecast is obtained by a statistical estimation combining the values of the 28 last observed days in those similar samples. Using comparison performed by the European Covid-19 Forecast Hub with the current state of the art forecast methods, we verify that the proposed global learning method, EpiLearn, compares favorably to methods forecasting from a single past curve. Public Library of Science 2023-06-21 /pmc/articles/PMC10317234/ /pubmed/37343039 http://dx.doi.org/10.1371/journal.pcbi.1010790 Text en © 2023 Morel et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Morel, Jean-David
Morel, Jean-Michel
Alvarez, Luis
Learning from the past: A short term forecast method for the COVID-19 incidence curve
title Learning from the past: A short term forecast method for the COVID-19 incidence curve
title_full Learning from the past: A short term forecast method for the COVID-19 incidence curve
title_fullStr Learning from the past: A short term forecast method for the COVID-19 incidence curve
title_full_unstemmed Learning from the past: A short term forecast method for the COVID-19 incidence curve
title_short Learning from the past: A short term forecast method for the COVID-19 incidence curve
title_sort learning from the past: a short term forecast method for the covid-19 incidence curve
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10317234/
https://www.ncbi.nlm.nih.gov/pubmed/37343039
http://dx.doi.org/10.1371/journal.pcbi.1010790
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