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Learning from the past: A short term forecast method for the COVID-19 incidence curve
The COVID-19 pandemy has created a radically new situation where most countries provide raw measurements of their daily incidence and disclose them in real time. This enables new machine learning forecast strategies where the prediction might no longer be based just on the past values of the current...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10317234/ https://www.ncbi.nlm.nih.gov/pubmed/37343039 http://dx.doi.org/10.1371/journal.pcbi.1010790 |
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author | Morel, Jean-David Morel, Jean-Michel Alvarez, Luis |
author_facet | Morel, Jean-David Morel, Jean-Michel Alvarez, Luis |
author_sort | Morel, Jean-David |
collection | PubMed |
description | The COVID-19 pandemy has created a radically new situation where most countries provide raw measurements of their daily incidence and disclose them in real time. This enables new machine learning forecast strategies where the prediction might no longer be based just on the past values of the current incidence curve, but could take advantage of observations in many countries. We present such a simple global machine learning procedure using all past daily incidence trend curves. Each of the 27,418 COVID-19 incidence trend curves in our database contains the values of 56 consecutive days extracted from observed incidence curves across 61 world regions and countries. Given a current incidence trend curve observed over the past four weeks, its forecast in the next four weeks is computed by matching it with the first four weeks of all samples, and ranking them by their similarity to the query curve. Then the 28 days forecast is obtained by a statistical estimation combining the values of the 28 last observed days in those similar samples. Using comparison performed by the European Covid-19 Forecast Hub with the current state of the art forecast methods, we verify that the proposed global learning method, EpiLearn, compares favorably to methods forecasting from a single past curve. |
format | Online Article Text |
id | pubmed-10317234 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-103172342023-07-04 Learning from the past: A short term forecast method for the COVID-19 incidence curve Morel, Jean-David Morel, Jean-Michel Alvarez, Luis PLoS Comput Biol Research Article The COVID-19 pandemy has created a radically new situation where most countries provide raw measurements of their daily incidence and disclose them in real time. This enables new machine learning forecast strategies where the prediction might no longer be based just on the past values of the current incidence curve, but could take advantage of observations in many countries. We present such a simple global machine learning procedure using all past daily incidence trend curves. Each of the 27,418 COVID-19 incidence trend curves in our database contains the values of 56 consecutive days extracted from observed incidence curves across 61 world regions and countries. Given a current incidence trend curve observed over the past four weeks, its forecast in the next four weeks is computed by matching it with the first four weeks of all samples, and ranking them by their similarity to the query curve. Then the 28 days forecast is obtained by a statistical estimation combining the values of the 28 last observed days in those similar samples. Using comparison performed by the European Covid-19 Forecast Hub with the current state of the art forecast methods, we verify that the proposed global learning method, EpiLearn, compares favorably to methods forecasting from a single past curve. Public Library of Science 2023-06-21 /pmc/articles/PMC10317234/ /pubmed/37343039 http://dx.doi.org/10.1371/journal.pcbi.1010790 Text en © 2023 Morel et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Morel, Jean-David Morel, Jean-Michel Alvarez, Luis Learning from the past: A short term forecast method for the COVID-19 incidence curve |
title | Learning from the past: A short term forecast method for the COVID-19 incidence curve |
title_full | Learning from the past: A short term forecast method for the COVID-19 incidence curve |
title_fullStr | Learning from the past: A short term forecast method for the COVID-19 incidence curve |
title_full_unstemmed | Learning from the past: A short term forecast method for the COVID-19 incidence curve |
title_short | Learning from the past: A short term forecast method for the COVID-19 incidence curve |
title_sort | learning from the past: a short term forecast method for the covid-19 incidence curve |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10317234/ https://www.ncbi.nlm.nih.gov/pubmed/37343039 http://dx.doi.org/10.1371/journal.pcbi.1010790 |
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