Cargando…

A biological camera that captures and stores images directly into DNA

The increasing integration between biological and digital interfaces has led to heightened interest in utilizing biological materials to store digital data, with the most promising one involving the storage of data within defined sequences of DNA that are created by de novo DNA synthesis. However, t...

Descripción completa

Detalles Bibliográficos
Autores principales: Lim, Cheng Kai, Yeoh, Jing Wui, Kunartama, Aurelius Andrew, Yew, Wen Shan, Poh, Chueh Loo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10318082/
https://www.ncbi.nlm.nih.gov/pubmed/37400476
http://dx.doi.org/10.1038/s41467-023-38876-w
_version_ 1785067960977588224
author Lim, Cheng Kai
Yeoh, Jing Wui
Kunartama, Aurelius Andrew
Yew, Wen Shan
Poh, Chueh Loo
author_facet Lim, Cheng Kai
Yeoh, Jing Wui
Kunartama, Aurelius Andrew
Yew, Wen Shan
Poh, Chueh Loo
author_sort Lim, Cheng Kai
collection PubMed
description The increasing integration between biological and digital interfaces has led to heightened interest in utilizing biological materials to store digital data, with the most promising one involving the storage of data within defined sequences of DNA that are created by de novo DNA synthesis. However, there is a lack of methods that can obviate the need for de novo DNA synthesis, which tends to be costly and inefficient. Here, in this work, we detail a method of capturing 2-dimensional light patterns into DNA, by utilizing optogenetic circuits to record light exposure into DNA, encoding spatial locations with barcoding, and retrieving stored images via high-throughput next-generation sequencing. We demonstrate the encoding of multiple images into DNA, totaling 1152 bits, selective image retrieval, as well as robustness to drying, heat and UV. We also demonstrate successful multiplexing using multiple wavelengths of light, capturing 2 different images simultaneously using red and blue light. This work thus establishes a ‘living digital camera’, paving the way towards integrating biological systems with digital devices.
format Online
Article
Text
id pubmed-10318082
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-103180822023-07-05 A biological camera that captures and stores images directly into DNA Lim, Cheng Kai Yeoh, Jing Wui Kunartama, Aurelius Andrew Yew, Wen Shan Poh, Chueh Loo Nat Commun Article The increasing integration between biological and digital interfaces has led to heightened interest in utilizing biological materials to store digital data, with the most promising one involving the storage of data within defined sequences of DNA that are created by de novo DNA synthesis. However, there is a lack of methods that can obviate the need for de novo DNA synthesis, which tends to be costly and inefficient. Here, in this work, we detail a method of capturing 2-dimensional light patterns into DNA, by utilizing optogenetic circuits to record light exposure into DNA, encoding spatial locations with barcoding, and retrieving stored images via high-throughput next-generation sequencing. We demonstrate the encoding of multiple images into DNA, totaling 1152 bits, selective image retrieval, as well as robustness to drying, heat and UV. We also demonstrate successful multiplexing using multiple wavelengths of light, capturing 2 different images simultaneously using red and blue light. This work thus establishes a ‘living digital camera’, paving the way towards integrating biological systems with digital devices. Nature Publishing Group UK 2023-07-03 /pmc/articles/PMC10318082/ /pubmed/37400476 http://dx.doi.org/10.1038/s41467-023-38876-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Lim, Cheng Kai
Yeoh, Jing Wui
Kunartama, Aurelius Andrew
Yew, Wen Shan
Poh, Chueh Loo
A biological camera that captures and stores images directly into DNA
title A biological camera that captures and stores images directly into DNA
title_full A biological camera that captures and stores images directly into DNA
title_fullStr A biological camera that captures and stores images directly into DNA
title_full_unstemmed A biological camera that captures and stores images directly into DNA
title_short A biological camera that captures and stores images directly into DNA
title_sort biological camera that captures and stores images directly into dna
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10318082/
https://www.ncbi.nlm.nih.gov/pubmed/37400476
http://dx.doi.org/10.1038/s41467-023-38876-w
work_keys_str_mv AT limchengkai abiologicalcamerathatcapturesandstoresimagesdirectlyintodna
AT yeohjingwui abiologicalcamerathatcapturesandstoresimagesdirectlyintodna
AT kunartamaaureliusandrew abiologicalcamerathatcapturesandstoresimagesdirectlyintodna
AT yewwenshan abiologicalcamerathatcapturesandstoresimagesdirectlyintodna
AT pohchuehloo abiologicalcamerathatcapturesandstoresimagesdirectlyintodna
AT limchengkai biologicalcamerathatcapturesandstoresimagesdirectlyintodna
AT yeohjingwui biologicalcamerathatcapturesandstoresimagesdirectlyintodna
AT kunartamaaureliusandrew biologicalcamerathatcapturesandstoresimagesdirectlyintodna
AT yewwenshan biologicalcamerathatcapturesandstoresimagesdirectlyintodna
AT pohchuehloo biologicalcamerathatcapturesandstoresimagesdirectlyintodna