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A sampling strategy for genome sequencing the British terrestrial arthropod fauna

The Darwin Tree of Life (DToL) project aims to sequence and assemble high-quality genomes from all eukaryote species in Britain and Ireland, with the first phase of the project concentrating on family-level coverage plus species of particular ecological, biomedical or evolutionary interest. We summa...

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Autores principales: Crowley, Liam, Allen, Heather, Barnes, Ian, Boyes, Douglas, Broad, Gavin R., Fletcher, Christopher, Holland, Peter W.H., Januszczak, Inez, Lawniczak, Mara, Lewis, Owen T., Macadam, Craig R., Mulhair, Peter O., Pereira da Conceicoa, Lyndall, Price, Benjamin W., Raper, Chris, Sivell, Olga, Sivess, Laura
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10318377/
https://www.ncbi.nlm.nih.gov/pubmed/37408610
http://dx.doi.org/10.12688/wellcomeopenres.18925.1
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author Crowley, Liam
Allen, Heather
Barnes, Ian
Boyes, Douglas
Broad, Gavin R.
Fletcher, Christopher
Holland, Peter W.H.
Januszczak, Inez
Lawniczak, Mara
Lewis, Owen T.
Macadam, Craig R.
Mulhair, Peter O.
Pereira da Conceicoa, Lyndall
Price, Benjamin W.
Raper, Chris
Sivell, Olga
Sivess, Laura
author_facet Crowley, Liam
Allen, Heather
Barnes, Ian
Boyes, Douglas
Broad, Gavin R.
Fletcher, Christopher
Holland, Peter W.H.
Januszczak, Inez
Lawniczak, Mara
Lewis, Owen T.
Macadam, Craig R.
Mulhair, Peter O.
Pereira da Conceicoa, Lyndall
Price, Benjamin W.
Raper, Chris
Sivell, Olga
Sivess, Laura
author_sort Crowley, Liam
collection PubMed
description The Darwin Tree of Life (DToL) project aims to sequence and assemble high-quality genomes from all eukaryote species in Britain and Ireland, with the first phase of the project concentrating on family-level coverage plus species of particular ecological, biomedical or evolutionary interest. We summarise the processes involved in (1) assessing the UK arthropod fauna and the status of individual species on UK lists; (2) prioritising and collecting species for initial genome sequencing; (3) handling methods to ensure that high-quality genomic DNA is preserved; and (4) compiling standard operating procedures for processing specimens for genome sequencing, identification verification and voucher specimen curation. We briefly explore some lessons learned from the pilot phase of DToL and the impact of the Covid-19 pandemic.
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spelling pubmed-103183772023-07-05 A sampling strategy for genome sequencing the British terrestrial arthropod fauna Crowley, Liam Allen, Heather Barnes, Ian Boyes, Douglas Broad, Gavin R. Fletcher, Christopher Holland, Peter W.H. Januszczak, Inez Lawniczak, Mara Lewis, Owen T. Macadam, Craig R. Mulhair, Peter O. Pereira da Conceicoa, Lyndall Price, Benjamin W. Raper, Chris Sivell, Olga Sivess, Laura Wellcome Open Res Open Letter The Darwin Tree of Life (DToL) project aims to sequence and assemble high-quality genomes from all eukaryote species in Britain and Ireland, with the first phase of the project concentrating on family-level coverage plus species of particular ecological, biomedical or evolutionary interest. We summarise the processes involved in (1) assessing the UK arthropod fauna and the status of individual species on UK lists; (2) prioritising and collecting species for initial genome sequencing; (3) handling methods to ensure that high-quality genomic DNA is preserved; and (4) compiling standard operating procedures for processing specimens for genome sequencing, identification verification and voucher specimen curation. We briefly explore some lessons learned from the pilot phase of DToL and the impact of the Covid-19 pandemic. F1000 Research Limited 2023-03-20 /pmc/articles/PMC10318377/ /pubmed/37408610 http://dx.doi.org/10.12688/wellcomeopenres.18925.1 Text en Copyright: © 2023 Crowley L et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Open Letter
Crowley, Liam
Allen, Heather
Barnes, Ian
Boyes, Douglas
Broad, Gavin R.
Fletcher, Christopher
Holland, Peter W.H.
Januszczak, Inez
Lawniczak, Mara
Lewis, Owen T.
Macadam, Craig R.
Mulhair, Peter O.
Pereira da Conceicoa, Lyndall
Price, Benjamin W.
Raper, Chris
Sivell, Olga
Sivess, Laura
A sampling strategy for genome sequencing the British terrestrial arthropod fauna
title A sampling strategy for genome sequencing the British terrestrial arthropod fauna
title_full A sampling strategy for genome sequencing the British terrestrial arthropod fauna
title_fullStr A sampling strategy for genome sequencing the British terrestrial arthropod fauna
title_full_unstemmed A sampling strategy for genome sequencing the British terrestrial arthropod fauna
title_short A sampling strategy for genome sequencing the British terrestrial arthropod fauna
title_sort sampling strategy for genome sequencing the british terrestrial arthropod fauna
topic Open Letter
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10318377/
https://www.ncbi.nlm.nih.gov/pubmed/37408610
http://dx.doi.org/10.12688/wellcomeopenres.18925.1
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