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DBALM: A novel method for identifying ornamental flowering plants based on DNA barcodes–leaf morphology

Whereas the presence of flowers on ornamental flowering plants is essential for their identification via traditional methods, ornamental flowering plants cannot be reliably identified in non‐flowering stages likewise. Here, DBALM (DNA Barcodes–Leaf Morphology), a new approach that combines DNA barco...

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Autores principales: Shen, Fengjiao, Bai, Xiaoxia, Li, Lin, Fan, Xiaoxuan, Song, Yifan, Yu, Miao, Cui, Mengwei, Jiang, Shulei, Li, Zhibin, Zhao, Jiancheng, Shi, Shuo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10320046/
https://www.ncbi.nlm.nih.gov/pubmed/37415642
http://dx.doi.org/10.1002/ece3.10250
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author Shen, Fengjiao
Bai, Xiaoxia
Li, Lin
Fan, Xiaoxuan
Song, Yifan
Yu, Miao
Cui, Mengwei
Jiang, Shulei
Li, Zhibin
Zhao, Jiancheng
Shi, Shuo
author_facet Shen, Fengjiao
Bai, Xiaoxia
Li, Lin
Fan, Xiaoxuan
Song, Yifan
Yu, Miao
Cui, Mengwei
Jiang, Shulei
Li, Zhibin
Zhao, Jiancheng
Shi, Shuo
author_sort Shen, Fengjiao
collection PubMed
description Whereas the presence of flowers on ornamental flowering plants is essential for their identification via traditional methods, ornamental flowering plants cannot be reliably identified in non‐flowering stages likewise. Here, DBALM (DNA Barcodes–Leaf Morphology), a new approach that combines DNA barcoding data with micromorphological features of the leaf epidermis and that is not limited by the flowering stage, was used to identify 16 evergreen rhododendron cultivars. First, the sequences of DNA barcodes, ITS, matK, psbA‐trnH, and rbcL, were obtained from the DNA of leaves. Phylogenetic analysis was conducted to clarify the groupings among all the samples based on the four markers. Then, microscopic features of the leaf epidermis were used to further distinguish individuals from the same clade. DNA barcoding permitted the 16 cultivars to be divided into eight groups. The microscopic features of the leaf epidermis permitted cultivars within the same clade to be distinguished. The matK + psbA‐trnH combination was the most effective barcode combination in this study. In addition, the new primer matK‐Rh_R was designed, and it increased the amplification rate of evergreen rhododendron cultivars to 100%. In sum, DBALM was capable of accurately identifying the 16 evergreen rhododendron cultivars using data collected from a single leaf in the vegetative growth stage. This method can greatly facilitate the identification and breeding of ornamental flowering plants.
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spelling pubmed-103200462023-07-06 DBALM: A novel method for identifying ornamental flowering plants based on DNA barcodes–leaf morphology Shen, Fengjiao Bai, Xiaoxia Li, Lin Fan, Xiaoxuan Song, Yifan Yu, Miao Cui, Mengwei Jiang, Shulei Li, Zhibin Zhao, Jiancheng Shi, Shuo Ecol Evol Research Articles Whereas the presence of flowers on ornamental flowering plants is essential for their identification via traditional methods, ornamental flowering plants cannot be reliably identified in non‐flowering stages likewise. Here, DBALM (DNA Barcodes–Leaf Morphology), a new approach that combines DNA barcoding data with micromorphological features of the leaf epidermis and that is not limited by the flowering stage, was used to identify 16 evergreen rhododendron cultivars. First, the sequences of DNA barcodes, ITS, matK, psbA‐trnH, and rbcL, were obtained from the DNA of leaves. Phylogenetic analysis was conducted to clarify the groupings among all the samples based on the four markers. Then, microscopic features of the leaf epidermis were used to further distinguish individuals from the same clade. DNA barcoding permitted the 16 cultivars to be divided into eight groups. The microscopic features of the leaf epidermis permitted cultivars within the same clade to be distinguished. The matK + psbA‐trnH combination was the most effective barcode combination in this study. In addition, the new primer matK‐Rh_R was designed, and it increased the amplification rate of evergreen rhododendron cultivars to 100%. In sum, DBALM was capable of accurately identifying the 16 evergreen rhododendron cultivars using data collected from a single leaf in the vegetative growth stage. This method can greatly facilitate the identification and breeding of ornamental flowering plants. John Wiley and Sons Inc. 2023-07-04 /pmc/articles/PMC10320046/ /pubmed/37415642 http://dx.doi.org/10.1002/ece3.10250 Text en © 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Shen, Fengjiao
Bai, Xiaoxia
Li, Lin
Fan, Xiaoxuan
Song, Yifan
Yu, Miao
Cui, Mengwei
Jiang, Shulei
Li, Zhibin
Zhao, Jiancheng
Shi, Shuo
DBALM: A novel method for identifying ornamental flowering plants based on DNA barcodes–leaf morphology
title DBALM: A novel method for identifying ornamental flowering plants based on DNA barcodes–leaf morphology
title_full DBALM: A novel method for identifying ornamental flowering plants based on DNA barcodes–leaf morphology
title_fullStr DBALM: A novel method for identifying ornamental flowering plants based on DNA barcodes–leaf morphology
title_full_unstemmed DBALM: A novel method for identifying ornamental flowering plants based on DNA barcodes–leaf morphology
title_short DBALM: A novel method for identifying ornamental flowering plants based on DNA barcodes–leaf morphology
title_sort dbalm: a novel method for identifying ornamental flowering plants based on dna barcodes–leaf morphology
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10320046/
https://www.ncbi.nlm.nih.gov/pubmed/37415642
http://dx.doi.org/10.1002/ece3.10250
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