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DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction

Intrinsic disorder in proteins is relatively abundant in nature and essential for a broad spectrum of cellular functions. While disorder can be accurately predicted from protein sequences, as it was empirically demonstrated in recent community-organized assessments, it is rather challenging to colle...

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Detalles Bibliográficos
Autores principales: Basu, Sushmita, Gsponer, Jörg, Kurgan, Lukasz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10320100/
https://www.ncbi.nlm.nih.gov/pubmed/37140058
http://dx.doi.org/10.1093/nar/gkad330
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author Basu, Sushmita
Gsponer, Jörg
Kurgan, Lukasz
author_facet Basu, Sushmita
Gsponer, Jörg
Kurgan, Lukasz
author_sort Basu, Sushmita
collection PubMed
description Intrinsic disorder in proteins is relatively abundant in nature and essential for a broad spectrum of cellular functions. While disorder can be accurately predicted from protein sequences, as it was empirically demonstrated in recent community-organized assessments, it is rather challenging to collect and compile a comprehensive prediction that covers multiple disorder functions. To this end, we introduce the DEPICTER2 (DisorderEd PredictIon CenTER) webserver that offers convenient access to a curated collection of fast and accurate disorder and disorder function predictors. This server includes a state-of-the-art disorder predictor, flDPnn, and five modern methods that cover all currently predictable disorder functions: disordered linkers and protein, peptide, DNA, RNA and lipid binding. DEPICTER2 allows selection of any combination of the six methods, batch predictions of up to 25 proteins per request and provides interactive visualization of the resulting predictions. The webserver is freely available at http://biomine.cs.vcu.edu/servers/DEPICTER2/
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spelling pubmed-103201002023-07-06 DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction Basu, Sushmita Gsponer, Jörg Kurgan, Lukasz Nucleic Acids Res Web Server Issue Intrinsic disorder in proteins is relatively abundant in nature and essential for a broad spectrum of cellular functions. While disorder can be accurately predicted from protein sequences, as it was empirically demonstrated in recent community-organized assessments, it is rather challenging to collect and compile a comprehensive prediction that covers multiple disorder functions. To this end, we introduce the DEPICTER2 (DisorderEd PredictIon CenTER) webserver that offers convenient access to a curated collection of fast and accurate disorder and disorder function predictors. This server includes a state-of-the-art disorder predictor, flDPnn, and five modern methods that cover all currently predictable disorder functions: disordered linkers and protein, peptide, DNA, RNA and lipid binding. DEPICTER2 allows selection of any combination of the six methods, batch predictions of up to 25 proteins per request and provides interactive visualization of the resulting predictions. The webserver is freely available at http://biomine.cs.vcu.edu/servers/DEPICTER2/ Oxford University Press 2023-05-04 /pmc/articles/PMC10320100/ /pubmed/37140058 http://dx.doi.org/10.1093/nar/gkad330 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Web Server Issue
Basu, Sushmita
Gsponer, Jörg
Kurgan, Lukasz
DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction
title DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction
title_full DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction
title_fullStr DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction
title_full_unstemmed DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction
title_short DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction
title_sort depicter2: a comprehensive webserver for intrinsic disorder and disorder function prediction
topic Web Server Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10320100/
https://www.ncbi.nlm.nih.gov/pubmed/37140058
http://dx.doi.org/10.1093/nar/gkad330
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