Cargando…
Free energy dissipation enhances spatial accuracy and robustness of self-positioned Turing pattern in small biochemical systems
Accurate and robust spatial orders are ubiquitous in living systems. In 1952, Turing proposed a general mechanism for pattern formation exemplified by a reaction–diffusion model with two chemical species in a large system. However, in small biological systems such as a cell, the existence of multipl...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10320341/ https://www.ncbi.nlm.nih.gov/pubmed/37403484 http://dx.doi.org/10.1098/rsif.2023.0276 |
_version_ | 1785068433063280640 |
---|---|
author | Zhang, Dongliang Zhang, Chenghao Ouyang, Qi Tu, Yuhai |
author_facet | Zhang, Dongliang Zhang, Chenghao Ouyang, Qi Tu, Yuhai |
author_sort | Zhang, Dongliang |
collection | PubMed |
description | Accurate and robust spatial orders are ubiquitous in living systems. In 1952, Turing proposed a general mechanism for pattern formation exemplified by a reaction–diffusion model with two chemical species in a large system. However, in small biological systems such as a cell, the existence of multiple Turing patterns and strong noise can lower the spatial order. Recently, a modified reaction–diffusion model with an additional chemical species is shown to stabilize the Turing pattern. Here, we study non-equilibrium thermodynamics of this three-species reaction–diffusion model to understand the relationship between energy cost and the performance of self-positioning. By using computational and analytical approaches, we show that beyond the onset of pattern formation the positioning error decreases as energy dissipation increases. In a finite system, we find that a specific Turing pattern exists only within a finite range of total molecule number. Energy dissipation broadens this range, which enhances the robustness of Turing pattern against molecule number fluctuations in living cells. The generality of these results is verified in a realistic model of the Muk system underlying DNA segregation in Escherichia coli, and testable predictions are made for the dependence of the accuracy and robustness of the spatial pattern on the ATP/ADP ratio. |
format | Online Article Text |
id | pubmed-10320341 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-103203412023-07-06 Free energy dissipation enhances spatial accuracy and robustness of self-positioned Turing pattern in small biochemical systems Zhang, Dongliang Zhang, Chenghao Ouyang, Qi Tu, Yuhai J R Soc Interface Life Sciences–Physics interface Accurate and robust spatial orders are ubiquitous in living systems. In 1952, Turing proposed a general mechanism for pattern formation exemplified by a reaction–diffusion model with two chemical species in a large system. However, in small biological systems such as a cell, the existence of multiple Turing patterns and strong noise can lower the spatial order. Recently, a modified reaction–diffusion model with an additional chemical species is shown to stabilize the Turing pattern. Here, we study non-equilibrium thermodynamics of this three-species reaction–diffusion model to understand the relationship between energy cost and the performance of self-positioning. By using computational and analytical approaches, we show that beyond the onset of pattern formation the positioning error decreases as energy dissipation increases. In a finite system, we find that a specific Turing pattern exists only within a finite range of total molecule number. Energy dissipation broadens this range, which enhances the robustness of Turing pattern against molecule number fluctuations in living cells. The generality of these results is verified in a realistic model of the Muk system underlying DNA segregation in Escherichia coli, and testable predictions are made for the dependence of the accuracy and robustness of the spatial pattern on the ATP/ADP ratio. The Royal Society 2023-07-05 /pmc/articles/PMC10320341/ /pubmed/37403484 http://dx.doi.org/10.1098/rsif.2023.0276 Text en © 2023 The Authors. https://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Life Sciences–Physics interface Zhang, Dongliang Zhang, Chenghao Ouyang, Qi Tu, Yuhai Free energy dissipation enhances spatial accuracy and robustness of self-positioned Turing pattern in small biochemical systems |
title | Free energy dissipation enhances spatial accuracy and robustness of self-positioned Turing pattern in small biochemical systems |
title_full | Free energy dissipation enhances spatial accuracy and robustness of self-positioned Turing pattern in small biochemical systems |
title_fullStr | Free energy dissipation enhances spatial accuracy and robustness of self-positioned Turing pattern in small biochemical systems |
title_full_unstemmed | Free energy dissipation enhances spatial accuracy and robustness of self-positioned Turing pattern in small biochemical systems |
title_short | Free energy dissipation enhances spatial accuracy and robustness of self-positioned Turing pattern in small biochemical systems |
title_sort | free energy dissipation enhances spatial accuracy and robustness of self-positioned turing pattern in small biochemical systems |
topic | Life Sciences–Physics interface |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10320341/ https://www.ncbi.nlm.nih.gov/pubmed/37403484 http://dx.doi.org/10.1098/rsif.2023.0276 |
work_keys_str_mv | AT zhangdongliang freeenergydissipationenhancesspatialaccuracyandrobustnessofselfpositionedturingpatterninsmallbiochemicalsystems AT zhangchenghao freeenergydissipationenhancesspatialaccuracyandrobustnessofselfpositionedturingpatterninsmallbiochemicalsystems AT ouyangqi freeenergydissipationenhancesspatialaccuracyandrobustnessofselfpositionedturingpatterninsmallbiochemicalsystems AT tuyuhai freeenergydissipationenhancesspatialaccuracyandrobustnessofselfpositionedturingpatterninsmallbiochemicalsystems |