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Comprehensive Histopathology Imaging in Pancreatic Biopsies: High Definition Infrared Imaging with Machine Learning Approach

Infrared (IR) based histopathology offers a new paradigm in looking at tissues and can provide a complimentary information source for more classical histopathology, which makes it a noteworthy tool given possible clinical application. This study aims to build a robust, pixel level machine learning m...

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Detalles Bibliográficos
Autores principales: Liberda, Danuta, Koziol, Paulina, Wrobel, Tomasz P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10321284/
https://www.ncbi.nlm.nih.gov/pubmed/37416783
http://dx.doi.org/10.7150/ijbs.83068
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author Liberda, Danuta
Koziol, Paulina
Wrobel, Tomasz P.
author_facet Liberda, Danuta
Koziol, Paulina
Wrobel, Tomasz P.
author_sort Liberda, Danuta
collection PubMed
description Infrared (IR) based histopathology offers a new paradigm in looking at tissues and can provide a complimentary information source for more classical histopathology, which makes it a noteworthy tool given possible clinical application. This study aims to build a robust, pixel level machine learning model for pancreatic cancer detection using IR imaging. In this article, we report a pancreatic cancer classification model based on data from over 600 biopsies (coming from 250 patients) imaged with IR diffraction-limited spatial resolution. To fully research model's classification ability, we measured tissues using two optical setups, resulting in Standard and High Definitions data. This forms one of the largest IR datasets analyzed up to now, with almost 700 million spectra of different tissue types. The first six-class model created for comprehensive histopathology achieved pixel (tissue) level AUC values above 0.95, giving a successful technique for digital staining with biochemical information extracted from IR spectra.
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spelling pubmed-103212842023-07-06 Comprehensive Histopathology Imaging in Pancreatic Biopsies: High Definition Infrared Imaging with Machine Learning Approach Liberda, Danuta Koziol, Paulina Wrobel, Tomasz P. Int J Biol Sci Research Paper Infrared (IR) based histopathology offers a new paradigm in looking at tissues and can provide a complimentary information source for more classical histopathology, which makes it a noteworthy tool given possible clinical application. This study aims to build a robust, pixel level machine learning model for pancreatic cancer detection using IR imaging. In this article, we report a pancreatic cancer classification model based on data from over 600 biopsies (coming from 250 patients) imaged with IR diffraction-limited spatial resolution. To fully research model's classification ability, we measured tissues using two optical setups, resulting in Standard and High Definitions data. This forms one of the largest IR datasets analyzed up to now, with almost 700 million spectra of different tissue types. The first six-class model created for comprehensive histopathology achieved pixel (tissue) level AUC values above 0.95, giving a successful technique for digital staining with biochemical information extracted from IR spectra. Ivyspring International Publisher 2023-06-19 /pmc/articles/PMC10321284/ /pubmed/37416783 http://dx.doi.org/10.7150/ijbs.83068 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Liberda, Danuta
Koziol, Paulina
Wrobel, Tomasz P.
Comprehensive Histopathology Imaging in Pancreatic Biopsies: High Definition Infrared Imaging with Machine Learning Approach
title Comprehensive Histopathology Imaging in Pancreatic Biopsies: High Definition Infrared Imaging with Machine Learning Approach
title_full Comprehensive Histopathology Imaging in Pancreatic Biopsies: High Definition Infrared Imaging with Machine Learning Approach
title_fullStr Comprehensive Histopathology Imaging in Pancreatic Biopsies: High Definition Infrared Imaging with Machine Learning Approach
title_full_unstemmed Comprehensive Histopathology Imaging in Pancreatic Biopsies: High Definition Infrared Imaging with Machine Learning Approach
title_short Comprehensive Histopathology Imaging in Pancreatic Biopsies: High Definition Infrared Imaging with Machine Learning Approach
title_sort comprehensive histopathology imaging in pancreatic biopsies: high definition infrared imaging with machine learning approach
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10321284/
https://www.ncbi.nlm.nih.gov/pubmed/37416783
http://dx.doi.org/10.7150/ijbs.83068
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