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Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment

Bathyarchaeia, as one of the most abundant microorganisms on Earth, play vital roles in the global carbon cycle. However, our understanding of their origin, evolution, and ecological functions remains poorly constrained. Here, we present the largest dataset of Bathyarchaeia metagenome assembled geno...

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Autores principales: Hou, Jialin, Wang, Yinzhao, Zhu, Pengfei, Yang, Na, Liang, Lewen, Yu, Tiantian, Niu, Mingyang, Konhauser, Kurt, Woodcroft, Ben J., Wang, Fengping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10321748/
https://www.ncbi.nlm.nih.gov/pubmed/37406125
http://dx.doi.org/10.1126/sciadv.adf5069
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author Hou, Jialin
Wang, Yinzhao
Zhu, Pengfei
Yang, Na
Liang, Lewen
Yu, Tiantian
Niu, Mingyang
Konhauser, Kurt
Woodcroft, Ben J.
Wang, Fengping
author_facet Hou, Jialin
Wang, Yinzhao
Zhu, Pengfei
Yang, Na
Liang, Lewen
Yu, Tiantian
Niu, Mingyang
Konhauser, Kurt
Woodcroft, Ben J.
Wang, Fengping
author_sort Hou, Jialin
collection PubMed
description Bathyarchaeia, as one of the most abundant microorganisms on Earth, play vital roles in the global carbon cycle. However, our understanding of their origin, evolution, and ecological functions remains poorly constrained. Here, we present the largest dataset of Bathyarchaeia metagenome assembled genome to date and reclassify Bathyarchaeia into eight order-level units corresponding to the former subgroup system. Highly diversified and versatile carbon metabolisms were found among different orders, particularly atypical C1 metabolic pathways, indicating that Bathyarchaeia represent overlooked important methylotrophs. Molecular dating results indicate that Bathyarchaeia diverged at ~3.3 billion years, followed by three major diversifications at ~3.0, ~2.5, and ~1.8 to 1.7 billion years, likely driven by continental emergence, growth, and intensive submarine volcanism, respectively. The lignin-degrading Bathyarchaeia clade emerged at ~300 million years perhaps contributed to the sharply decreased carbon sequestration rate during the Late Carboniferous period. The evolutionary history of Bathyarchaeia potentially has been shaped by geological forces, which, in turn, affected Earth’s surface environment.
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spelling pubmed-103217482023-07-06 Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment Hou, Jialin Wang, Yinzhao Zhu, Pengfei Yang, Na Liang, Lewen Yu, Tiantian Niu, Mingyang Konhauser, Kurt Woodcroft, Ben J. Wang, Fengping Sci Adv Earth, Environmental, Ecological, and Space Sciences Bathyarchaeia, as one of the most abundant microorganisms on Earth, play vital roles in the global carbon cycle. However, our understanding of their origin, evolution, and ecological functions remains poorly constrained. Here, we present the largest dataset of Bathyarchaeia metagenome assembled genome to date and reclassify Bathyarchaeia into eight order-level units corresponding to the former subgroup system. Highly diversified and versatile carbon metabolisms were found among different orders, particularly atypical C1 metabolic pathways, indicating that Bathyarchaeia represent overlooked important methylotrophs. Molecular dating results indicate that Bathyarchaeia diverged at ~3.3 billion years, followed by three major diversifications at ~3.0, ~2.5, and ~1.8 to 1.7 billion years, likely driven by continental emergence, growth, and intensive submarine volcanism, respectively. The lignin-degrading Bathyarchaeia clade emerged at ~300 million years perhaps contributed to the sharply decreased carbon sequestration rate during the Late Carboniferous period. The evolutionary history of Bathyarchaeia potentially has been shaped by geological forces, which, in turn, affected Earth’s surface environment. American Association for the Advancement of Science 2023-07-05 /pmc/articles/PMC10321748/ /pubmed/37406125 http://dx.doi.org/10.1126/sciadv.adf5069 Text en Copyright © 2023 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (https://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.
spellingShingle Earth, Environmental, Ecological, and Space Sciences
Hou, Jialin
Wang, Yinzhao
Zhu, Pengfei
Yang, Na
Liang, Lewen
Yu, Tiantian
Niu, Mingyang
Konhauser, Kurt
Woodcroft, Ben J.
Wang, Fengping
Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment
title Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment
title_full Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment
title_fullStr Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment
title_full_unstemmed Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment
title_short Taxonomic and carbon metabolic diversification of Bathyarchaeia during its coevolution history with early Earth surface environment
title_sort taxonomic and carbon metabolic diversification of bathyarchaeia during its coevolution history with early earth surface environment
topic Earth, Environmental, Ecological, and Space Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10321748/
https://www.ncbi.nlm.nih.gov/pubmed/37406125
http://dx.doi.org/10.1126/sciadv.adf5069
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