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Machine learning of atomic dynamics and statistical surface identities in gold nanoparticles
It is known that metal nanoparticles (NPs) may be dynamic and atoms may move within them even at fairly low temperatures. Characterizing such complex dynamics is key for understanding NPs’ properties in realistic regimes, but detailed information on, e.g., the stability, survival, and interconversio...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10322832/ https://www.ncbi.nlm.nih.gov/pubmed/37407706 http://dx.doi.org/10.1038/s42004-023-00936-z |
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author | Rapetti, Daniele Delle Piane, Massimo Cioni, Matteo Polino, Daniela Ferrando, Riccardo Pavan, Giovanni M. |
author_facet | Rapetti, Daniele Delle Piane, Massimo Cioni, Matteo Polino, Daniela Ferrando, Riccardo Pavan, Giovanni M. |
author_sort | Rapetti, Daniele |
collection | PubMed |
description | It is known that metal nanoparticles (NPs) may be dynamic and atoms may move within them even at fairly low temperatures. Characterizing such complex dynamics is key for understanding NPs’ properties in realistic regimes, but detailed information on, e.g., the stability, survival, and interconversion rates of the atomic environments (AEs) populating them are non-trivial to attain. In this study, we decode the intricate atomic dynamics of metal NPs by using a machine learning approach analyzing high-dimensional data obtained from molecular dynamics simulations. Using different-shape gold NPs as a representative example, an AEs’ dictionary allows us to label step-by-step the individual atoms in the NPs, identifying the native and non-native AEs and populating them along the MD simulations at various temperatures. By tracking the emergence, annihilation, lifetime, and dynamic interconversion of the AEs, our approach permits estimating a “statistical equivalent identity” for metal NPs, providing a comprehensive picture of the intrinsic atomic dynamics that shape their properties. |
format | Online Article Text |
id | pubmed-10322832 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103228322023-07-07 Machine learning of atomic dynamics and statistical surface identities in gold nanoparticles Rapetti, Daniele Delle Piane, Massimo Cioni, Matteo Polino, Daniela Ferrando, Riccardo Pavan, Giovanni M. Commun Chem Article It is known that metal nanoparticles (NPs) may be dynamic and atoms may move within them even at fairly low temperatures. Characterizing such complex dynamics is key for understanding NPs’ properties in realistic regimes, but detailed information on, e.g., the stability, survival, and interconversion rates of the atomic environments (AEs) populating them are non-trivial to attain. In this study, we decode the intricate atomic dynamics of metal NPs by using a machine learning approach analyzing high-dimensional data obtained from molecular dynamics simulations. Using different-shape gold NPs as a representative example, an AEs’ dictionary allows us to label step-by-step the individual atoms in the NPs, identifying the native and non-native AEs and populating them along the MD simulations at various temperatures. By tracking the emergence, annihilation, lifetime, and dynamic interconversion of the AEs, our approach permits estimating a “statistical equivalent identity” for metal NPs, providing a comprehensive picture of the intrinsic atomic dynamics that shape their properties. Nature Publishing Group UK 2023-07-05 /pmc/articles/PMC10322832/ /pubmed/37407706 http://dx.doi.org/10.1038/s42004-023-00936-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Rapetti, Daniele Delle Piane, Massimo Cioni, Matteo Polino, Daniela Ferrando, Riccardo Pavan, Giovanni M. Machine learning of atomic dynamics and statistical surface identities in gold nanoparticles |
title | Machine learning of atomic dynamics and statistical surface identities in gold nanoparticles |
title_full | Machine learning of atomic dynamics and statistical surface identities in gold nanoparticles |
title_fullStr | Machine learning of atomic dynamics and statistical surface identities in gold nanoparticles |
title_full_unstemmed | Machine learning of atomic dynamics and statistical surface identities in gold nanoparticles |
title_short | Machine learning of atomic dynamics and statistical surface identities in gold nanoparticles |
title_sort | machine learning of atomic dynamics and statistical surface identities in gold nanoparticles |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10322832/ https://www.ncbi.nlm.nih.gov/pubmed/37407706 http://dx.doi.org/10.1038/s42004-023-00936-z |
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