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Interaction gene set between osteoclasts and regulatory CD4(+) T cells can accurately predict the prognosis of patients with osteosarcoma
Osteoclasts (OCs) and regulatory CD4(+) T cells (CD4(+)Tregs) are important components in the tumor microenvironment (TME) of osteosarcoma. In this study, we collected six osteosarcoma samples from our previous study (GSE162454). We also integrated a public database (GSE152048), which included singl...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10323104/ https://www.ncbi.nlm.nih.gov/pubmed/37150900 http://dx.doi.org/10.1111/cas.15821 |
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author | Li, Feicui Tang, Haijun Luo, Xiaoting Li, Xiangde Luo, Kai Liu, Shangyu Liang, Jiming Liao, Shijie Zhong, Chaoyi Zhan, Xinli Wei, Qingjun Feng, Wenyu Liu, Yun |
author_facet | Li, Feicui Tang, Haijun Luo, Xiaoting Li, Xiangde Luo, Kai Liu, Shangyu Liang, Jiming Liao, Shijie Zhong, Chaoyi Zhan, Xinli Wei, Qingjun Feng, Wenyu Liu, Yun |
author_sort | Li, Feicui |
collection | PubMed |
description | Osteoclasts (OCs) and regulatory CD4(+) T cells (CD4(+)Tregs) are important components in the tumor microenvironment (TME) of osteosarcoma. In this study, we collected six osteosarcoma samples from our previous study (GSE162454). We also integrated a public database (GSE152048), which included single cell sequencing data of 11 osteosarcoma patients. We obtained 138,192 cells and then successfully identified OCs and CD4(+)Tregs. Based on the interaction gene set between OCs and CD4(+)Tregs, patients from GSE21257 were distinguished into two clusters by consensus clustering analysis. Both the tumor immune microenvironment and survival prognosis between the two clusters were significantly different. Subsequently, five model genes were identified by protein–protein interaction network based on differentially upregulated genes of cluster 2. Quantitative RT‐PCR was used to detect their expression in human osteoblast and osteosarcoma cells. A prognostic model was successfully established using these five genes. Kaplan–Meier survival analysis found that patients in the high‐risk group had worse survival (p = 0.029). Therefore, our study first found that cell–cell communication between OCs and CD4(+)Tregs significantly alters TME and is connected to poor prognosis of OS. The model we constructed can accurately predict prognosis for osteosarcoma patients. |
format | Online Article Text |
id | pubmed-10323104 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103231042023-07-07 Interaction gene set between osteoclasts and regulatory CD4(+) T cells can accurately predict the prognosis of patients with osteosarcoma Li, Feicui Tang, Haijun Luo, Xiaoting Li, Xiangde Luo, Kai Liu, Shangyu Liang, Jiming Liao, Shijie Zhong, Chaoyi Zhan, Xinli Wei, Qingjun Feng, Wenyu Liu, Yun Cancer Sci ORIGINAL ARTICLES Osteoclasts (OCs) and regulatory CD4(+) T cells (CD4(+)Tregs) are important components in the tumor microenvironment (TME) of osteosarcoma. In this study, we collected six osteosarcoma samples from our previous study (GSE162454). We also integrated a public database (GSE152048), which included single cell sequencing data of 11 osteosarcoma patients. We obtained 138,192 cells and then successfully identified OCs and CD4(+)Tregs. Based on the interaction gene set between OCs and CD4(+)Tregs, patients from GSE21257 were distinguished into two clusters by consensus clustering analysis. Both the tumor immune microenvironment and survival prognosis between the two clusters were significantly different. Subsequently, five model genes were identified by protein–protein interaction network based on differentially upregulated genes of cluster 2. Quantitative RT‐PCR was used to detect their expression in human osteoblast and osteosarcoma cells. A prognostic model was successfully established using these five genes. Kaplan–Meier survival analysis found that patients in the high‐risk group had worse survival (p = 0.029). Therefore, our study first found that cell–cell communication between OCs and CD4(+)Tregs significantly alters TME and is connected to poor prognosis of OS. The model we constructed can accurately predict prognosis for osteosarcoma patients. John Wiley and Sons Inc. 2023-05-07 /pmc/articles/PMC10323104/ /pubmed/37150900 http://dx.doi.org/10.1111/cas.15821 Text en © 2023 The Authors. Cancer Science published by John Wiley & Sons Australia, Ltd on behalf of Japanese Cancer Association. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | ORIGINAL ARTICLES Li, Feicui Tang, Haijun Luo, Xiaoting Li, Xiangde Luo, Kai Liu, Shangyu Liang, Jiming Liao, Shijie Zhong, Chaoyi Zhan, Xinli Wei, Qingjun Feng, Wenyu Liu, Yun Interaction gene set between osteoclasts and regulatory CD4(+) T cells can accurately predict the prognosis of patients with osteosarcoma |
title | Interaction gene set between osteoclasts and regulatory CD4(+)
T cells can accurately predict the prognosis of patients with osteosarcoma |
title_full | Interaction gene set between osteoclasts and regulatory CD4(+)
T cells can accurately predict the prognosis of patients with osteosarcoma |
title_fullStr | Interaction gene set between osteoclasts and regulatory CD4(+)
T cells can accurately predict the prognosis of patients with osteosarcoma |
title_full_unstemmed | Interaction gene set between osteoclasts and regulatory CD4(+)
T cells can accurately predict the prognosis of patients with osteosarcoma |
title_short | Interaction gene set between osteoclasts and regulatory CD4(+)
T cells can accurately predict the prognosis of patients with osteosarcoma |
title_sort | interaction gene set between osteoclasts and regulatory cd4(+)
t cells can accurately predict the prognosis of patients with osteosarcoma |
topic | ORIGINAL ARTICLES |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10323104/ https://www.ncbi.nlm.nih.gov/pubmed/37150900 http://dx.doi.org/10.1111/cas.15821 |
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